Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZNG	60270	2025-04-26	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.53	0.0	0.04	17.81	0.00	2.488	5.27	2.06	2.2	97.8	0.0	1.21	0.81	0.55	0.92	4.06	3347	416	2	0	2	16	0	logfile
✔	8ZND	60268	2025-04-26	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	17.09	0.00	2.439	3.94	1.18	1.4	98.6	0.0	1.46	0.83	0.53	0.92	4.32	3334	416	2	0	1	24	0	logfile
✔	8ZNC	60267	2025-04-26	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.002	0.54	0.0	0.04	19.17	0.00	2.450	5.87	1.47	1.2	98.8	0.0	1.36	1.18	0.50	0.90	4.06	3356	416	2	0	3	24	0	logfile
✔	9FGT	50424	2025-04-26	2024-05-25	3.8	4.00	3.76	3.9	0.005	0.71	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	3.9	0.004	0.68	0.0	0.05	15.25	0.00	2.466	5.58	1.61	8.3	91.7	0.0	-1.71	0.97	0.72	0.80	1.97	2921	373	3	0	1	0	0	logfile
✔	9FGR	50418	2025-04-26	2024-05-25	4.0	4.21	3.94	4.1	0.003	0.59	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.66	0.0	0.04	14.63	0.00	2.611	8.59	3.48	6.7	93.3	0.0	-1.25	1.00	0.77	0.82	—	3209	412	3	0	1	1	0	logfile
✔	9C0i	45085	2025-04-28	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	2.8	0.002	0.45	0.0	0.03	20.87	0.00	2.039	4.28	0.80	1.7	98.3	0.0	1.99	0.44	0.68	0.89	3.59	7676	425	5	197	2	0	0	logfile
✔	9FGU	50428	2025-04-26	2024-05-25	4.3	4.49	4.26	4.3	0.003	0.73	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.004	0.77	0.0	0.05	13.70	0.00	2.544	15.72	0.00	6.6	93.4	0.0	-1.49	1.06	0.76	0.72	—	3241	413	3	0	1	0	0	logfile
✔	9C0F	45082	2025-04-30	2024-05-25	3.6	4.55	3.56	3.5	0.028	1.94	5.0	0.11	16.99	0.01	2.314	1.58	0.34	2.2	97.7	0.1	-0.53	0.82	0.70	1.47	3.6	0.003	0.74	0.0	0.04	18.69	0.00	2.504	9.46	1.01	4.6	95.3	0.1	0.20	0.83	0.86	0.78	0.85	9507	970	6	70	4	0	0	logfile
✔	9C0J	45086	2025-04-28	2024-05-25	3.17	2.92	3.10	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.006	0.71	0.0	0.04	22.08	0.01	1.966	2.84	3.22	2.4	97.6	0.0	0.62	0.39	0.70	0.89	4.73	7010	425	5	164	3	0	0	logfile
✔	9FGS	50420	2025-04-26	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.67	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.004	0.70	0.0	0.04	15.52	0.00	2.414	10.73	3.80	8.4	91.3	0.2	-1.81	0.96	0.79	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9C09	45077	2025-04-27	2024-05-24	2.36	3.23	2.39	3.0	0.004	0.69	0.0	0.04	15.07	0.01	2.342	3.30	0.69	4.5	95.5	0.0	4.21	0.77	0.86	3.87	3.0	0.003	0.58	0.0	0.03	15.78	0.00	2.489	1.71	1.15	4.5	95.5	0.0	4.87	0.55	0.67	0.86	3.09	4300	514	4	0	22	0	0	logfile
✔	8ZMY	60262	2025-04-29	2024-05-24	2.9	2.88	2.75	3.0	0.010	0.91	0.0	0.05	15.08	0.00	2.203	20.23	0.00	4.2	95.8	0.0	-4.52	0.51	0.79	2.59	2.9	0.007	0.93	0.0	0.05	17.99	0.00	2.530	6.63	4.90	7.0	93.0	0.0	-2.97	2.47	0.59	0.91	3.91	8652	1176	19	0	27	0	0	logfile
✔	9BZS	45074	2025-04-26	2024-05-24	3.14	3.20	1.72	3.4	0.003	0.76	0.0	0.06	10.69	0.00	2.313	7.93	0.00	4.5	95.5	0.0	-2.40	0.52	0.86	5.38	3.4	0.003	0.59	0.0	0.05	13.78	0.00	2.524	4.31	1.79	6.1	93.9	0.0	-2.40	0.36	0.51	0.86	5.32	3595	460	5	0	0	0	0	logfile
✔	9C07	45075	2025-04-27	2024-05-24	2.73	3.55	2.71	3.3	0.004	0.58	0.0	0.04	12.73	0.01	2.267	6.41	0.23	4.1	95.9	0.0	4.88	0.75	0.89	5.06	3.3	0.003	0.57	0.0	0.03	13.68	0.00	2.526	1.50	0.23	4.7	95.3	0.0	5.00	1.92	0.60	0.81	4.47	4512	524	4	0	36	0	0	logfile
✔	8ZMH	60247	2025-04-26	2024-05-23	4.6	8.01	4.96	6.0	0.010	1.67	0.0	0.08	27.49	0.01	1.595	16.28	0.00	0.0	0.0	0.0	—	0.89	0.71	—	6.5	0.008	1.14	0.0	0.06	29.73	0.01	1.078	85.81	0.00	0.0	0.0	0.0	—	3.65	0.93	0.86	—	3594	0	1	169	0	0	0	logfile
✔	8ZMK	60250	2025-04-30	2024-05-23	3.85	6.58	3.91	7.3	0.002	0.42	0.0	0.03	18.72	0.00	2.215	6.89	2.27	10.4	89.0	0.6	-2.54	0.70	0.33	-0.27	7.3	0.004	0.95	1.0	0.04	20.31	0.00	2.117	18.74	2.27	5.9	94.1	0.0	-0.59	1.91	0.80	0.69	-0.78	9204	698	3	169	0	0	0	logfile
✔	9BYi	45034	2025-04-27	2024-05-23	2.95	3.95	2.96	3.6	0.005	0.65	0.0	0.04	15.74	0.00	2.279	2.89	0.00	5.8	94.2	0.0	4.10	0.73	0.86	2.66	3.6	0.003	0.59	0.0	0.03	15.22	0.00	2.505	1.93	1.80	5.4	94.6	0.0	5.09	1.80	0.66	0.84	2.36	4505	524	4	0	31	0	0	logfile
✔	9BYN	45039	2025-04-26	2024-05-23	3.36	3.18	1.75	3.5	0.006	0.66	0.0	0.05	12.74	0.00	2.177	10.27	0.00	4.6	95.4	0.0	-2.21	0.51	0.84	4.47	3.4	0.003	0.59	0.0	0.05	14.39	0.00	2.481	6.75	1.04	7.6	92.4	0.0	-2.39	1.39	0.45	0.83	3.92	3560	455	5	0	0	0	0	logfile
✔	8ZMi	60248	2025-04-30	2024-05-23	3.49	4.85	3.63	3.9	0.003	0.62	0.0	0.04	22.15	0.01	2.146	14.45	0.16	2.6	97.1	0.3	0.35	0.84	0.62	1.26	3.9	0.003	0.61	0.0	0.03	22.51	0.00	2.496	14.03	1.78	2.9	97.1	0.0	0.46	0.67	0.90	0.82	1.12	9235	698	4	169	1	0	0	logfile
✔	8ZMJ	60249	2025-04-30	2024-05-23	3.73	5.72	3.90	3.9	0.004	0.68	0.0	0.05	21.61	0.00	2.205	17.11	0.49	2.7	97.3	0.0	0.66	0.87	0.65	1.14	4.0	0.003	0.68	0.0	0.03	22.01	0.00	2.025	18.79	2.27	2.3	97.7	0.0	0.92	1.93	0.92	0.84	0.66	9184	696	3	169	0	0	0	logfile

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