Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BUE	44907	2025-04-29	2024-05-16	3.6	3.84	3.66	3.8	0.003	0.57	0.0	0.04	15.56	0.00	2.201	7.24	0.42	1.8	98.2	0.0	0.52	0.66	0.79	1.05	3.8	0.004	0.94	1.0	0.04	16.54	0.00	1.588	8.99	4.94	2.2	97.8	0.0	0.83	0.47	0.67	0.81	1.17	9002	1148	7	0	1	0	0	logfile
✔	9FCJ	50317	2025-04-26	2024-05-15	2.7	2.89	2.65	2.9	0.003	0.57	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.56	0.0	0.04	17.09	0.00	2.595	5.24	2.51	2.1	97.9	0.0	1.45	0.42	0.52	0.84	2.79	3174	389	5	0	2	29	0	logfile
✔	9BTW	44898	2025-04-30	2024-05-15	3.0	3.31	3.10	3.3	0.002	0.51	0.0	0.04	15.76	0.00	2.160	4.60	0.10	2.2	97.8	0.0	1.74	0.61	0.76	1.87	3.3	0.002	0.55	0.0	0.04	16.52	0.00	2.392	5.29	2.34	2.1	97.9	0.0	1.91	0.45	0.58	0.76	1.83	9713	1274	8	0	2	0	0	logfile
✔	8ZiP	60125	2025-04-29	2024-05-14	4.9	4.46	4.59	4.2	0.006	0.69	0.0	0.05	14.31	0.00	1.384	15.27	0.00	6.7	93.3	0.0	-3.13	0.84	0.72	—	4.2	0.003	0.71	0.0	0.04	14.38	0.00	2.390	11.90	0.00	4.9	95.1	0.0	0.32	1.14	0.86	0.76	—	8662	1084	3	0	1	0	0	logfile
✔	8ZiU	60130	2025-04-29	2024-05-14	3.54	3.27	3.04	3.2	0.004	0.62	0.0	0.04	14.02	0.00	2.130	8.41	0.00	5.2	94.8	0.0	-2.79	0.82	0.86	3.04	3.2	0.003	0.56	0.0	0.04	15.69	0.00	2.466	4.76	1.29	5.1	94.9	0.0	0.49	0.45	0.83	0.86	2.69	8668	1085	3	0	1	0	0	logfile
✔	9BT8	44881	2025-04-27	2024-05-14	3.34	3.52	3.31	3.5	0.005	0.64	0.0	0.04	16.43	0.00	2.269	6.88	0.32	3.0	97.0	0.0	-0.41	0.74	0.85	2.56	3.5	0.004	0.60	0.0	0.04	16.94	0.00	2.540	5.91	4.67	3.3	96.7	0.0	-0.37	0.30	0.72	0.84	2.26	5712	728	6	0	0	0	0	logfile
✔	8ZJE	60142	2025-04-29	2024-05-14	3.07	3.62	3.23	3.6	0.005	0.71	0.0	0.05	14.59	0.01	2.202	5.20	0.33	3.9	96.1	0.0	1.20	0.57	0.80	3.04	3.6	0.002	0.59	0.0	0.04	15.71	0.00	2.505	5.67	2.41	2.9	97.1	0.0	1.28	0.47	0.52	0.76	2.15	8743	1135	7	0	3	0	0	logfile
✔	8ZJD	60141	2025-04-29	2024-05-14	3.06	3.48	3.18	3.4	0.005	0.70	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.61	0.0	0.04	15.64	0.00	2.506	5.62	2.59	3.7	96.3	0.0	0.98	0.84	0.60	0.80	2.31	8820	1144	6	0	0	0	0	logfile
✔	9BSV	44873	2025-04-30	2024-05-13	3.1	3.64	3.06	3.5	0.006	0.79	1.0	0.06	19.52	0.01	1.819	7.83	0.69	4.2	95.1	0.7	-0.72	0.81	0.89	4.06	3.5	0.003	0.62	0.0	0.04	15.97	0.00	2.402	3.76	1.19	4.5	95.2	0.3	-0.41	0.37	0.77	0.87	3.93	9879	1248	10	0	21	0	0	logfile
✔	8Zi9	60122	2025-04-29	2024-05-13	3.08	3.35	3.08	3.3	0.008	0.71	0.0	0.05	14.97	0.00	2.157	14.26	0.00	5.5	94.5	0.0	-2.50	0.79	0.73	2.04	3.2	0.003	0.62	0.0	0.04	16.65	0.00	2.453	6.26	1.77	4.2	95.8	0.0	0.89	1.55	0.85	0.87	1.91	8899	1113	3	0	1	0	0	logfile
✔	9BSN	44870	2025-04-27	2024-05-13	2.7	3.61	2.63	3.3	0.004	0.62	0.0	0.03	16.28	0.00	2.363	2.13	0.92	4.2	95.8	0.0	4.46	0.78	0.88	3.35	3.3	0.003	0.52	0.0	0.03	15.49	0.00	2.556	2.36	0.69	5.3	94.7	0.0	4.84	0.60	0.66	0.85	2.80	4342	514	4	0	26	0	0	logfile
✔	8ZHQ	60112	2025-04-29	2024-05-11	2.37	3.14	2.49	2.9	0.004	0.68	0.0	0.05	18.66	0.01	2.181	10.10	3.44	8.3	91.7	0.0	-1.02	0.79	0.86	3.96	2.9	0.004	0.72	0.0	0.05	16.51	0.00	2.391	8.96	2.53	8.8	91.2	0.0	-0.92	0.32	0.79	0.86	3.95	8904	1164	8	0	6	0	0	logfile
✔	9FAB	50271	2025-04-29	2024-05-10	3.9	3.54	3.78	3.6	0.010	1.60	0.0	0.07	11.24	0.01	2.531	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.6	0.003	0.65	0.0	0.05	14.83	0.00	2.507	5.43	2.47	8.2	91.8	0.0	-4.95	1.00	0.46	0.69	2.18	8595	585	10	0	5	0	4190	logfile
✔	9FAA	50270	2025-04-29	2024-05-10	3.6	3.34	3.58	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.275	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.8	0.004	0.69	0.0	0.05	13.34	0.00	2.528	7.08	2.04	6.7	93.3	0.0	-4.02	1.10	0.52	0.75	3.07	8695	590	10	0	5	0	4235	logfile
✔	8ZHG	60102	2025-04-27	2024-05-10	3.51	3.69	3.43	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.004	0.67	0.0	0.04	17.51	0.01	2.564	8.35	4.43	6.0	94.0	0.0	-1.32	1.97	0.65	0.79	1.76	3326	425	4	0	2	0	0	logfile
✔	8ZH8	60096	2025-04-30	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.74	0.0	0.04	16.22	0.00	2.483	11.78	2.30	3.6	96.4	0.0	0.79	0.96	0.70	0.76	0.55	10048	1316	8	0	1	0	0	logfile
✔	9FAC	50272	2025-04-29	2024-05-10	3.9	3.38	3.96	4.3	0.007	1.20	0.0	0.07	11.94	0.01	2.226	11.78	0.00	3.8	96.2	0.0	-4.35	0.47	0.63	2.06	3.8	0.004	0.69	0.0	0.05	15.14	0.01	2.422	10.16	2.06	7.5	92.5	0.0	-4.03	1.96	0.47	0.65	1.70	8595	585	10	0	5	0	4190	logfile
✔	8ZGS	60089	2025-04-29	2024-05-09	3.04	3.27	3.07	3.3	0.007	0.76	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.003	0.57	0.0	0.04	17.13	0.00	2.440	3.87	3.33	3.9	96.1	0.0	1.31	0.32	0.64	0.81	2.73	8915	1077	13	0	14	0	0	logfile
✔	8ZGT	60090	2025-04-29	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.81	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.002	0.60	0.0	0.04	17.34	0.00	2.438	3.53	2.52	4.1	95.8	0.1	1.08	0.32	0.64	0.81	2.97	8915	1077	13	0	14	0	0	logfile
✔	8ZFZ	60072	2025-04-30	2024-05-08	3.3	3.54	3.33	3.6	0.004	0.72	0.0	0.04	18.50	0.00	2.158	20.94	0.72	7.4	92.5	0.2	-1.00	0.51	0.63	0.59	3.6	0.003	0.70	0.0	0.04	18.52	0.00	2.436	12.81	5.54	7.0	92.8	0.2	-0.73	0.41	0.59	0.69	0.74	9065	1155	5	0	0	0	0	logfile

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