Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BPV	44791	2025-04-27	2024-05-08	3.0	2.88	2.94	3.1	0.007	0.93	0.0	0.06	16.58	0.01	2.205	8.58	0.61	1.9	98.1	0.0	0.62	0.62	0.78	2.15	3.1	0.003	0.60	0.0	0.04	17.59	0.00	2.568	5.49	1.83	3.0	97.0	0.0	0.83	0.45	0.67	0.83	2.32	4417	542	4	0	2	0	0	logfile
✔	9BPU	44790	2025-04-27	2024-05-08	3.26	3.28	3.26	3.4	0.006	0.78	0.0	0.05	17.75	0.00	2.216	8.90	0.64	5.0	95.0	0.0	-0.01	0.71	0.77	2.29	3.4	0.003	0.63	0.0	0.04	16.73	0.00	2.524	6.67	2.78	3.1	96.9	0.0	0.46	0.34	0.70	0.78	1.98	4318	529	5	0	5	0	0	logfile
✔	8ZF4	60050	2025-04-26	2024-05-07	3.05	2.37	2.34	2.2	0.006	0.95	0.0	0.05	13.23	0.01	2.290	9.68	0.54	7.4	92.6	0.0	-0.59	0.79	0.77	4.07	2.9	0.004	0.72	0.0	0.04	15.66	0.01	2.467	6.95	1.63	6.7	93.3	0.0	1.06	1.00	0.80	0.79	3.66	2073	288	1	0	0	0	0	logfile
✔	8ZF9	60053	2025-04-30	2024-05-07	2.56	2.44	2.48	2.2	0.010	0.89	8.0	0.06	12.39	0.00	1.710	10.06	0.45	5.4	94.6	0.0	-0.94	0.83	0.83	4.29	2.2	0.003	0.63	0.0	0.04	14.73	0.00	2.456	5.31	2.57	3.0	97.0	0.0	0.22	1.38	0.85	0.85	3.63	9330	1273	6	0	0	0	0	logfile
✔	8ZFC	60056	2025-04-29	2024-05-07	2.68	2.47	2.60	2.2	0.006	0.74	2.0	0.05	12.45	0.00	2.051	7.63	0.12	5.6	94.4	0.0	-0.79	0.81	0.79	4.41	2.2	0.004	0.65	0.0	0.04	15.50	0.00	2.402	5.57	2.61	3.9	96.1	0.0	0.23	0.40	0.84	0.86	3.40	8545	1149	5	0	0	0	0	logfile
✔	8ZF7	60052	2025-04-26	2024-05-07	3.15	2.41	2.43	2.9	0.007	0.90	1.0	0.06	12.64	0.01	2.300	9.64	0.54	6.0	94.0	0.0	-0.35	0.72	0.77	2.96	2.9	0.004	0.74	0.0	0.04	14.80	0.01	2.598	5.44	0.00	4.9	95.1	0.0	1.64	0.46	0.73	0.79	1.99	2076	288	1	0	0	0	0	logfile
✔	8ZFA	60054	2025-04-29	2024-05-07	2.96	2.20	2.83	2.0	0.004	0.74	3.0	0.06	12.50	0.01	1.845	10.39	0.50	4.8	95.2	0.0	0.22	0.75	0.72	3.82	1.9	0.003	0.69	0.0	0.04	15.66	0.01	2.547	8.28	2.86	4.1	95.9	0.0	0.57	1.18	0.78	0.78	3.15	8313	1134	5	0	0	0	0	logfile
✔	8ZF6	60051	2025-04-29	2024-05-07	2.98	2.27	2.88	2.9	0.009	0.80	3.0	0.06	12.40	0.01	2.120	8.51	0.62	4.7	95.3	0.0	-0.35	0.81	0.78	3.84	2.9	0.004	0.65	0.0	0.04	15.66	0.00	2.433	6.32	2.25	3.5	96.5	0.0	0.54	1.59	0.84	0.83	3.76	8284	1129	5	0	0	0	0	logfile
✔	9BPD	44772	2025-04-28	2024-05-07	3.63	4.09	3.84	4.1	0.003	0.68	0.0	0.05	17.66	0.00	2.046	13.38	0.38	12.0	87.7	0.3	-2.62	0.61	0.71	2.29	4.1	0.004	0.72	0.0	0.05	17.27	0.00	1.946	9.83	2.89	11.6	88.4	0.0	-2.33	0.39	0.67	0.77	2.17	7551	918	12	0	21	0	0	logfile
✔	8ZFB	60055	2025-04-26	2024-05-07	3.78	2.07	2.33	1.8	0.005	0.98	2.0	0.07	13.25	0.01	1.786	10.45	0.52	8.2	91.8	0.0	0.06	0.57	0.55	3.32	1.4	0.003	0.69	0.0	0.04	14.82	0.01	2.583	3.65	2.59	4.3	95.7	0.0	2.28	0.41	0.62	0.60	2.71	2088	286	1	0	0	0	0	logfile
✔	8ZFD	60057	2025-04-26	2024-05-07	2.56	2.01	2.33	2.6	0.007	0.99	2.0	0.06	13.01	0.01	2.217	9.64	0.46	9.9	90.1	0.0	-1.61	0.77	0.76	3.98	2.6	0.004	0.68	0.0	0.04	15.71	0.00	2.600	6.88	4.15	5.8	94.2	0.0	0.48	0.43	0.75	0.78	3.64	2231	294	1	0	0	0	0	logfile
✔	9BoG	44735	2025-04-30	2024-05-03	3.99	2.85	3.92	3.9	0.002	0.54	0.0	0.04	14.61	0.00	2.218	6.86	0.29	3.2	96.8	0.0	0.13	0.76	0.72	2.01	2.3	0.004	0.75	0.0	0.05	15.51	0.00	2.499	10.73	7.14	6.2	93.8	0.0	-0.43	1.34	0.77	0.77	2.52	9370	1438	4	0	0	0	0	logfile
✔	9Boi	44742	2025-04-26	2024-05-03	3.22	3.46	3.16	3.4	0.006	0.91	0.0	0.05	16.43	0.01	2.319	3.63	0.00	2.6	97.4	0.0	-1.38	0.55	0.79	3.30	3.5	0.003	0.61	0.0	0.04	16.69	0.00	2.505	3.48	1.17	2.9	97.1	0.0	3.13	0.82	0.58	0.81	2.13	3256	423	2	0	1	0	0	logfile
✔	8ZDR	60006	2025-04-28	2024-05-03	2.65	2.88	2.68	2.9	0.005	0.67	0.0	0.04	23.33	0.01	1.902	7.72	0.55	4.0	96.0	0.0	-0.52	0.66	0.75	3.99	2.9	0.004	0.60	0.0	0.04	23.00	0.00	2.118	12.28	2.19	3.6	96.4	0.0	0.02	0.90	0.65	0.75	3.16	7440	446	5	187	1	0	0	logfile
✔	9BoF	44734	2025-04-28	2024-05-03	2.61	3.47	2.64	3.2	0.010	0.87	0.0	0.05	15.88	0.01	1.813	15.83	6.87	5.3	94.5	0.2	-1.43	0.81	0.79	3.63	3.2	0.005	0.75	0.0	0.05	15.65	0.01	2.509	11.16	1.44	5.0	95.0	0.0	0.45	1.35	0.80	0.82	3.42	8076	1060	6	0	0	0	0	logfile
✔	9F6V	50241	2025-04-27	2024-05-02	3.5	3.71	3.48	3.7	0.023	1.55	0.0	0.09	12.47	0.01	2.292	1.59	0.00	2.7	97.3	0.0	0.30	0.53	0.65	2.58	3.7	0.003	0.67	0.0	0.05	15.88	0.00	2.484	7.27	2.07	3.2	96.8	0.0	0.49	1.49	0.70	0.79	1.55	6610	844	3	0	1	0	0	logfile
✔	9F6N	50235	2025-04-26	2024-05-02	3.6	3.87	3.61	3.8	0.008	1.20	0.0	0.05	16.58	0.01	1.906	3.91	2.80	3.4	96.6	0.0	-0.74	0.53	0.77	1.34	3.8	0.003	0.75	0.0	0.04	16.83	0.00	2.258	10.93	6.62	4.3	95.7	0.0	2.21	1.37	0.58	0.81	1.17	3652	471	2	0	1	0	0	logfile
✔	9F6o	50236	2025-04-27	2024-05-02	3.9	4.30	4.08	4.2	0.004	0.80	0.0	0.04	17.49	0.00	2.268	16.41	3.07	3.2	96.8	0.0	0.92	0.55	0.76	0.55	4.2	0.004	0.76	0.0	0.04	17.34	0.00	2.516	14.56	4.71	3.4	96.6	0.0	1.27	0.52	0.56	0.76	0.69	4571	591	2	0	0	0	0	logfile
✔	9F6P	50237	2025-04-26	2024-05-02	3.7	3.92	3.71	4.0	0.004	0.93	0.0	0.05	18.01	0.01	2.090	19.52	2.05	2.7	97.3	0.0	1.39	0.48	0.70	1.10	4.0	0.004	0.84	0.0	0.04	17.89	0.00	2.158	14.61	7.44	3.8	96.2	0.0	1.17	0.78	0.53	0.74	0.63	3720	482	2	0	1	0	0	logfile
✔	9F6U	50240	2025-04-27	2024-05-02	3.6	3.80	3.65	4.0	0.018	1.56	0.0	0.08	11.74	0.01	2.278	7.12	0.00	3.0	97.0	0.0	-0.11	0.54	0.57	1.05	4.0	0.004	0.78	0.0	0.05	16.77	0.00	2.455	11.48	3.56	3.6	96.4	0.0	-0.58	1.02	0.59	0.65	1.08	6570	845	4	1	1	0	0	logfile

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