Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F6o	50236	2025-04-27	2024-05-02	3.9	4.30	4.08	4.2	0.004	0.80	0.0	0.04	17.49	0.00	2.268	16.41	3.07	3.2	96.8	0.0	0.92	0.55	0.76	0.55	4.2	0.004	0.76	0.0	0.04	17.34	0.00	2.516	14.56	4.71	3.4	96.6	0.0	1.27	0.52	0.56	0.76	0.69	4571	591	2	0	0	0	0	logfile
✔	9BLT	44676	2025-04-28	2024-05-01	3.38	3.70	3.50	3.8	0.003	0.51	0.0	0.04	18.59	0.00	2.218	8.29	2.72	4.8	95.2	0.0	0.49	0.71	0.79	1.81	3.8	0.003	0.53	0.0	0.04	18.66	0.00	2.458	7.31	3.50	4.3	95.7	0.0	0.74	0.81	0.70	0.79	1.70	7098	921	4	0	0	0	0	logfile
✔	9BLS	44675	2025-04-28	2024-05-01	2.96	3.23	3.00	3.3	0.003	0.51	0.0	0.04	19.38	0.00	2.224	8.42	3.62	5.9	94.1	0.0	0.28	0.67	0.80	2.45	3.3	0.004	0.57	0.0	0.04	19.47	0.00	2.521	7.30	3.62	5.8	94.2	0.0	0.49	0.21	0.67	0.80	2.18	7112	921	4	0	0	0	0	logfile
✔	9BLW	44678	2025-04-30	2024-05-01	3.2	3.35	3.15	3.4	0.002	0.53	0.0	0.04	16.25	0.00	2.257	7.41	0.38	2.1	97.9	0.0	1.03	0.64	0.76	1.87	3.4	0.003	0.55	0.0	0.04	17.03	0.00	2.558	6.85	3.52	2.2	97.8	0.0	1.13	0.42	0.64	0.81	2.47	9961	1266	9	0	2	0	0	logfile
✔	9F6J	50226	2025-04-30	2024-05-01	3.9	4.11	3.86	4.0	0.003	0.90	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.64	0.0	0.04	17.67	0.00	2.517	4.49	2.02	2.2	97.8	0.0	0.88	0.83	0.75	0.81	1.74	9751	1118	4	32	1	0	0	logfile
✔	9BLU	44677	2025-04-27	2024-05-01	3.38	3.73	3.50	3.8	0.003	0.45	0.0	0.04	18.95	0.00	2.214	6.89	3.18	2.9	97.1	0.0	1.22	0.68	0.79	1.04	3.8	0.002	0.48	0.0	0.04	19.22	0.00	2.470	5.58	3.47	3.3	96.7	0.0	1.60	0.20	0.68	0.79	1.00	6377	831	3	0	0	0	0	logfile
✔	9F6L	50228	2025-04-30	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.83	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.003	0.61	0.0	0.04	17.87	0.00	2.297	4.96	1.51	2.1	97.9	0.0	1.59	0.68	0.76	0.82	0.84	9639	1118	4	26	3	0	0	logfile
✔	8ZD1	39946	2025-04-29	2024-04-30	2.6	2.43	2.53	2.1	0.010	0.91	3.0	0.06	12.77	0.01	2.017	8.61	0.25	4.7	95.3	0.0	-0.34	0.85	0.84	4.66	2.2	0.003	0.59	0.0	0.04	15.16	0.00	2.456	4.96	2.73	3.4	96.6	0.0	0.64	1.38	0.85	0.86	3.70	8364	1140	5	0	0	0	0	logfile
✔	9BLB	44652	2025-04-29	2024-04-30	3.2	3.36	3.17	3.4	0.003	0.48	0.0	0.04	16.73	0.00	2.285	5.41	0.31	1.8	98.2	0.0	1.32	0.67	0.80	1.84	3.4	0.003	0.51	0.0	0.04	17.28	0.00	2.564	4.90	3.12	2.7	97.3	0.0	1.11	0.97	0.67	0.84	2.80	9008	1142	7	0	1	0	0	logfile
✔	9BLL	44666	2025-04-26	2024-04-30	4.1	4.20	4.00	4.1	0.007	0.88	0.0	0.06	13.88	0.01	2.108	23.93	0.27	12.9	87.1	0.0	-2.86	0.63	0.81	—	4.1	0.003	0.75	0.0	0.05	13.63	0.00	2.554	10.85	0.00	8.3	91.7	0.0	-2.17	0.40	0.63	0.79	—	3428	441	5	0	3	0	0	logfile
✔	9BLC	44653	2025-04-29	2024-04-30	3.3	3.72	3.30	3.6	0.003	0.53	1.0	0.04	16.16	0.00	2.146	7.80	0.84	2.2	97.7	0.1	0.21	0.75	0.79	1.82	3.6	0.003	0.59	0.0	0.04	16.59	0.00	2.427	5.99	3.90	3.5	96.5	0.0	0.82	1.12	0.75	0.86	1.96	9015	1152	7	0	1	0	0	logfile
✔	8ZCJ	39931	2025-04-28	2024-04-29	3.09	3.33	3.12	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.004	0.70	0.0	0.04	16.40	0.00	2.261	9.16	5.58	5.1	94.9	0.0	-1.14	0.40	0.63	0.71	1.72	7808	1126	7	0	1	0	0	logfile
✔	8ZCF	39928	2025-04-29	2024-04-29	2.9	2.22	2.94	1.6	0.004	0.64	0.0	0.04	16.40	0.00	2.194	14.31	0.71	5.5	94.5	0.0	-0.08	0.76	0.75	2.11	2.1	0.004	0.68	0.0	0.05	16.94	0.00	2.545	10.76	3.79	4.6	95.4	0.0	-0.20	2.11	0.77	0.76	1.92	8053	1038	5	0	0	0	0	logfile
✔	9BKK	44643	2025-04-28	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.64	0.0	0.04	15.92	0.00	2.379	6.03	1.27	2.4	97.6	0.0	1.48	1.15	0.56	0.73	2.16	6809	890	6	0	1	0	0	logfile
✔	8ZCE	39927	2025-04-28	2024-04-29	3.1	2.23	3.12	2.0	0.004	0.66	0.0	0.04	15.44	0.01	2.122	14.60	0.36	4.6	95.4	0.0	-0.37	0.73	0.71	1.54	2.0	0.003	0.57	0.0	0.04	16.30	0.00	2.542	9.65	3.41	3.3	96.7	0.0	0.19	0.38	0.74	0.71	1.37	7963	1039	5	0	0	0	0	logfile
✔	8ZC1	39919	2025-04-27	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.76	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.004	0.66	0.0	0.05	13.40	0.00	2.504	10.62	0.00	5.7	94.3	0.0	-1.54	0.56	0.74	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZC5	39923	2025-04-27	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.004	0.70	0.0	0.05	15.18	0.00	2.496	9.29	1.71	4.8	95.2	0.0	-1.25	1.47	0.75	0.80	2.41	6515	830	8	0	2	0	0	logfile
✔	8ZBQ	39907	2025-04-27	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.004	0.64	0.0	0.04	17.02	0.00	2.449	12.19	4.23	7.1	92.9	0.0	-0.98	1.27	0.66	0.80	2.42	6346	779	2	0	0	0	0	logfile
✔	9F42	50181	2025-04-29	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.004	0.61	0.0	0.04	15.19	0.00	2.560	10.53	3.52	4.5	95.5	0.0	0.01	1.42	0.59	0.77	2.42	8465	1061	2	0	0	0	0	logfile
✔	9F43	50182	2025-04-29	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.63	0.0	0.04	15.82	0.00	2.563	8.16	3.42	4.6	95.3	0.1	0.39	0.58	0.65	0.81	1.66	8465	1061	2	0	0	0	0	logfile

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