Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F42	50181	2025-04-29	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.004	0.61	0.0	0.04	15.19	0.00	2.560	10.53	3.52	4.5	95.5	0.0	0.01	1.42	0.59	0.77	2.42	8465	1061	2	0	0	0	0	logfile
✔	8ZBA	39899	2025-04-30	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.60	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.004	0.70	0.0	0.05	16.53	0.00	2.410	9.04	2.72	10.6	89.4	0.1	-2.48	2.03	0.72	0.78	1.76	9973	1267	4	0	0	0	0	logfile
✔	9F43	50182	2025-04-29	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.63	0.0	0.04	15.82	0.00	2.563	8.16	3.42	4.6	95.3	0.1	0.39	0.58	0.65	0.81	1.66	8465	1061	2	0	0	0	0	logfile
✔	8ZAP	39883	2025-04-27	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	2.8	0.003	0.52	0.0	0.04	15.61	0.00	2.613	4.91	2.69	1.3	98.7	0.0	2.56	0.47	0.69	0.89	3.52	6442	776	9	0	27	36	0	logfile
✔	8ZAM	39880	2025-04-27	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	2.8	0.003	0.56	0.0	0.04	18.46	0.00	2.555	9.75	2.22	4.7	95.3	0.0	2.02	0.44	0.53	0.86	2.88	4000	492	4	0	2	0	0	logfile
✔	8ZB0	39893	2025-04-27	2024-04-25	3.7	3.92	3.31	3.9	0.021	1.18	0.0	0.06	15.90	0.03	1.682	16.25	4.78	12.0	87.1	0.9	-4.98	0.64	0.78	2.80	3.9	0.010	0.63	0.0	0.04	16.58	0.00	2.065	5.49	3.78	7.4	92.6	0.0	0.97	0.52	0.62	0.75	2.09	4880	658	4	0	8	0	0	logfile
✔	8ZAQ	39884	2025-04-27	2024-04-25	2.6	2.80	2.61	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	2.8	0.004	0.57	0.0	0.04	16.83	0.01	2.607	6.41	3.29	1.6	98.4	0.0	2.53	0.28	0.68	0.89	4.51	6449	776	9	0	27	36	0	logfile
✔	8ZAN	39881	2025-04-26	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	2.7	0.003	0.65	0.0	0.04	16.89	0.01	2.325	7.79	2.96	7.0	92.6	0.4	2.04	0.53	0.51	0.84	4.22	3938	492	4	0	2	0	0	logfile
✔	9F3F	50173	2025-04-28	2024-04-25	2.4	2.90	2.38	2.7	0.008	1.18	1.0	0.07	16.34	0.01	2.180	16.32	2.45	4.3	95.7	0.0	-0.13	0.84	0.84	3.55	2.6	0.003	0.62	0.0	0.04	17.83	0.00	2.542	8.09	2.82	3.8	96.2	0.0	1.49	0.58	0.83	0.86	3.02	7496	939	4	1	0	0	0	logfile
✔	8ZAo	39882	2025-04-27	2024-04-25	2.6	3.07	2.75	3.0	0.003	0.57	0.0	0.04	15.64	0.01	1.601	7.52	1.64	1.2	98.8	0.0	1.98	0.53	0.85	5.36	3.0	0.004	0.53	0.0	0.04	15.81	0.00	2.628	5.47	2.84	1.3	98.7	0.0	2.46	0.43	0.51	0.85	5.32	6432	777	9	0	18	30	0	logfile
✔	9BiU	44602	2025-04-30	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.004	0.60	0.0	0.04	17.08	0.00	2.282	5.59	1.60	7.1	92.9	0.0	0.73	0.36	0.62	0.85	2.66	9458	595	3	0	1	0	4738	logfile
✔	9BiS	44600	2025-04-30	2024-04-24	3.2	3.55	3.15	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.56	0.0	0.04	18.23	0.00	2.304	4.65	1.60	7.1	92.9	0.0	0.94	0.79	0.61	0.84	2.96	9444	595	3	0	1	0	4734	logfile
✔	9BiT	44601	2025-04-30	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.55	0.0	0.04	18.31	0.00	2.226	4.54	2.80	6.3	93.7	0.0	0.67	0.81	0.63	0.85	2.73	9448	595	3	0	1	0	4734	logfile
✔	9BJ2	44627	2025-04-27	2024-04-24	2.8	3.05	2.87	3.1	0.002	0.54	0.0	0.05	15.67	0.00	2.208	5.62	2.60	2.9	97.1	0.0	0.22	0.64	0.84	4.59	3.1	0.003	0.56	0.0	0.05	15.89	0.00	2.589	3.92	4.49	4.1	95.9	0.0	0.38	0.88	0.67	0.86	4.39	3920	501	4	0	3	0	0	logfile
✔	9BiM	44593	2025-04-27	2024-04-23	3.67	3.99	3.64	4.0	0.004	0.75	0.0	0.04	13.02	0.01	2.259	4.86	0.00	2.9	97.1	0.0	0.00	0.55	0.80	1.98	4.0	0.003	0.56	0.0	0.04	13.67	0.00	2.636	6.35	1.21	2.7	97.3	0.0	1.93	0.33	0.60	0.82	1.58	3992	516	2	0	1	0	0	logfile
✔	9Bi9	44577	2025-04-28	2024-04-23	2.61	3.67	2.64	3.4	0.003	0.53	0.0	0.04	12.52	0.00	2.243	5.09	0.00	4.4	95.6	0.0	0.82	0.72	0.75	3.46	3.4	0.003	0.59	0.0	0.04	14.99	0.01	2.390	4.31	0.72	3.0	97.0	0.0	0.65	2.18	0.74	0.79	2.31	7578	497	2	0	1	0	3712	logfile
✔	9BHX	44556	2025-04-29	2024-04-22	3.94	4.14	3.92	4.1	0.013	1.34	0.0	0.05	17.52	0.01	1.661	20.33	0.44	6.7	92.8	0.5	-1.38	0.72	0.75	1.79	4.1	0.006	0.82	0.0	0.05	18.23	0.01	2.478	14.04	5.09	9.1	90.7	0.2	-1.42	0.57	0.74	0.80	1.78	8376	1048	1	0	0	0	0	logfile
✔	9BHW	44555	2025-04-29	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.61	0.0	0.04	15.92	0.00	2.467	4.90	1.33	2.5	97.5	0.0	1.96	0.66	0.78	0.84	3.93	8759	1071	8	4	0	0	0	logfile
✔	9F25	50138	2025-04-28	2024-04-22	3.7	3.97	3.75	3.9	0.002	0.53	0.0	0.04	16.77	0.00	2.204	9.30	0.13	1.9	98.1	0.0	0.58	0.72	0.77	0.82	3.9	0.003	0.58	0.0	0.04	17.04	0.00	2.462	8.25	2.95	2.4	97.6	0.0	0.80	2.70	0.72	0.77	0.86	6717	830	1	0	0	0	0	logfile
✔	8Z7R	39825	2025-04-26	2024-04-21	3.15	3.31	3.09	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.67	0.0	0.04	16.76	0.00	2.589	10.28	4.50	3.1	96.9	0.0	1.52	1.09	0.57	0.82	1.91	3098	387	1	0	0	0	0	logfile

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