Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z7R	39825	2025-04-26	2024-04-21	3.15	3.31	3.09	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.67	0.0	0.04	16.76	0.00	2.589	10.28	4.50	3.1	96.9	0.0	1.52	1.09	0.57	0.82	1.91	3098	387	1	0	0	0	0	logfile
✔	8Z7Z	39833	2025-04-26	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.003	0.64	0.0	0.04	15.54	0.01	2.562	11.96	2.67	3.4	96.6	0.0	1.62	1.11	0.47	0.67	0.27	2834	389	2	0	1	0	0	logfile
✔	8Z7S	39826	2025-04-26	2024-04-21	3.05	3.26	2.92	3.3	0.004	0.56	0.0	0.04	16.81	0.01	2.234	8.47	0.30	2.9	97.1	0.0	0.35	0.59	0.83	1.68	3.3	0.004	0.61	0.0	0.04	16.98	0.00	2.585	8.47	3.60	2.3	97.7	0.0	2.50	1.09	0.58	0.83	2.01	3116	387	2	0	1	0	0	logfile
✔	8Z7Y	39832	2025-04-26	2024-04-21	3.02	3.16	2.95	3.2	0.013	0.80	0.0	0.04	16.15	0.00	2.215	10.80	0.00	2.6	97.4	0.0	1.07	0.48	0.67	1.67	3.2	0.003	0.56	0.0	0.04	16.86	0.00	2.444	8.38	2.14	2.4	97.6	0.0	1.72	0.98	0.47	0.69	1.58	3083	382	2	0	1	0	0	logfile
✔	8Z7T	39827	2025-04-26	2024-04-21	3.39	3.55	3.20	3.6	0.003	0.62	0.0	0.04	16.89	0.01	2.208	10.57	0.60	3.4	96.6	0.0	0.43	0.56	0.82	1.51	3.6	0.003	0.65	0.0	0.04	16.98	0.00	2.577	8.81	2.40	1.6	98.4	0.0	2.05	0.41	0.53	0.80	1.52	3110	387	2	0	1	0	0	logfile
✔	9BHM	44550	2025-04-30	2024-04-21	2.9	3.15	2.84	3.1	0.008	0.65	0.0	0.04	14.74	0.00	2.165	10.17	0.13	2.9	97.1	0.0	-0.56	0.50	0.68	1.61	3.1	0.004	0.69	0.0	0.04	16.48	0.00	2.462	12.00	3.36	3.4	96.6	0.0	-0.29	1.01	0.57	0.74	1.70	7150	890	5	0	1	0	0	logfile
✔	8Z7X	39831	2025-04-26	2024-04-21	3.36	3.51	3.33	3.5	0.006	0.80	0.0	0.05	13.91	0.00	2.198	8.66	0.00	4.0	96.0	0.0	-0.59	0.52	0.70	1.15	3.5	0.003	0.61	0.0	0.04	15.69	0.00	2.564	9.00	2.61	4.6	95.4	0.0	0.73	0.99	0.51	0.72	0.43	2955	376	2	0	1	0	0	logfile
✔	8Z7W	39830	2025-04-26	2024-04-21	3.09	3.32	3.05	3.3	0.007	1.03	3.0	0.07	17.01	0.02	2.241	20.67	3.30	3.7	96.3	0.0	-0.06	0.59	0.82	1.84	3.3	0.003	0.62	0.0	0.04	17.18	0.00	2.596	8.65	4.20	2.9	97.1	0.0	1.76	1.10	0.58	0.82	2.33	3107	387	2	0	1	0	0	logfile
✔	8Z86	39839	2025-04-26	2024-04-21	3.87	4.10	3.72	4.1	0.005	1.06	1.0	0.06	17.27	0.01	2.294	5.87	0.58	7.3	92.4	0.2	-2.85	0.58	0.78	1.52	4.1	0.004	0.72	0.0	0.04	17.12	0.00	2.461	9.67	5.80	7.1	92.9	0.0	-2.18	0.31	0.59	0.80	1.36	3219	415	3	0	0	0	0	logfile
✔	8Z7L	39819	2025-04-28	2024-04-20	3.42	2.85	3.34	1.3	0.002	0.46	0.0	0.04	8.76	0.00	2.324	6.07	4.12	4.9	95.1	0.0	-2.92	0.86	0.86	3.47	1.4	0.004	0.74	0.0	0.05	13.54	0.00	2.150	8.17	5.18	5.2	94.8	0.0	-1.23	0.68	0.87	0.90	3.27	6774	843	9	0	12	0	0	logfile
✔	9F1R	50135	2025-04-28	2024-04-20	3.67	3.93	3.68	3.9	0.004	0.67	0.0	0.05	17.91	0.01	2.035	12.55	0.24	4.6	95.4	0.0	-0.50	0.69	0.80	1.97	3.9	0.003	0.63	0.0	0.04	16.82	0.00	2.423	9.93	3.68	4.7	95.3	0.0	0.06	0.33	0.70	0.81	1.91	7870	960	5	0	9	0	0	logfile
✔	9BHC	44540	2025-04-30	2024-04-19	2.75	3.66	2.78	3.4	0.013	1.20	0.0	0.08	13.32	0.01	2.201	6.93	0.00	4.4	95.6	0.0	1.01	0.82	0.91	2.51	3.4	0.003	0.64	0.0	0.04	15.40	0.00	2.458	6.78	1.06	3.3	96.7	0.0	1.95	0.94	0.75	0.84	2.21	9608	1230	4	0	0	0	0	logfile
✔	9BH0	44528	2025-04-26	2024-04-19	3.4	2.55	3.39	3.3	0.003	0.57	0.0	0.04	14.29	0.00	2.071	4.94	0.32	2.1	97.9	0.0	2.89	0.74	0.83	2.29	3.3	0.005	0.69	0.0	0.04	16.47	0.00	2.591	6.09	3.48	1.0	99.0	0.0	2.75	0.54	0.79	0.86	1.88	2934	391	2	0	0	0	0	logfile
✔	8Z7B	39811	2025-04-30	2024-04-19	3.3	2.94	3.27	1.4	0.003	0.48	0.0	0.04	13.47	0.00	2.279	5.18	2.96	2.9	97.1	0.0	-2.05	0.93	0.88	3.76	1.4	0.004	0.76	0.0	0.05	13.77	0.00	2.502	6.51	2.37	4.0	96.0	0.0	-0.06	1.96	0.95	0.92	3.15	9580	1145	13	0	24	0	0	logfile
✔	9BH1	44529	2025-04-27	2024-04-19	3.1	2.56	3.08	3.1	0.003	0.48	0.0	0.04	13.56	0.00	2.269	5.60	0.00	0.3	99.7	0.0	2.41	0.71	0.83	3.08	3.0	0.003	0.64	0.0	0.04	16.25	0.00	2.593	9.06	3.54	1.0	99.0	0.0	1.99	1.77	0.75	0.85	2.27	2942	395	1	0	0	0	0	logfile
✔	9BHE	44542	2025-04-30	2024-04-19	3.8	4.96	3.90	4.1	0.013	1.43	0.0	0.08	15.88	0.01	2.197	14.89	0.28	3.6	96.4	0.0	-0.01	0.83	0.85	1.50	4.2	0.004	0.71	0.0	0.04	15.49	0.00	2.604	11.93	1.41	4.8	95.2	0.0	1.08	0.93	0.82	0.86	0.98	9878	1246	8	4	0	0	0	logfile
✔	9BGY	44526	2025-04-26	2024-04-19	3.0	2.40	3.00	3.0	0.003	0.50	0.0	0.04	14.21	0.00	2.152	6.28	0.32	2.1	97.9	0.0	2.93	0.71	0.83	2.27	3.0	0.004	0.66	0.0	0.04	16.45	0.00	2.590	7.44	2.55	2.1	97.9	0.0	2.78	0.50	0.77	0.86	3.14	2916	389	1	0	0	0	0	logfile
✔	8Z6T	39804	2025-04-27	2024-04-19	2.92	2.31	2.90	2.1	0.005	0.63	0.0	0.05	8.85	0.00	2.196	4.27	3.78	5.3	94.4	0.4	-2.88	0.61	0.74	3.34	2.1	0.003	0.69	0.0	0.04	13.44	0.00	2.560	7.30	5.38	6.2	93.8	0.0	-0.47	0.61	0.63	0.79	3.04	4526	589	3	0	0	0	0	logfile
✔	8Z74	39810	2025-04-28	2024-04-19	3.01	2.28	3.02	2.1	0.003	0.63	0.0	0.04	14.94	0.00	2.235	13.45	0.00	3.9	96.1	0.0	0.52	0.73	0.74	2.84	2.1	0.004	0.65	0.0	0.04	15.20	0.00	2.539	10.78	2.78	3.3	96.7	0.0	0.42	0.29	0.72	0.73	2.91	6709	847	5	0	2	0	0	logfile
✔	9BGZ	44527	2025-04-26	2024-04-19	3.0	2.38	3.02	2.9	0.003	0.54	0.0	0.04	15.10	0.00	2.258	7.60	0.66	1.7	98.3	0.0	2.35	0.73	0.84	2.25	2.9	0.003	0.67	0.0	0.04	16.88	0.00	2.515	9.16	4.30	0.6	99.4	0.0	2.11	1.76	0.74	0.85	1.88	2783	369	1	0	0	0	0	logfile

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