Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DNM	47042	2025-04-27	2024-09-17	3.47	2.46	3.46	2.1	0.004	0.63	0.0	0.04	16.43	0.01	2.222	7.96	0.18	4.7	95.3	0.0	-0.32	0.74	0.75	2.76	2.1	0.004	0.64	0.0	0.04	16.36	0.01	2.557	5.37	2.99	6.0	94.0	0.0	0.23	0.32	0.74	0.77	2.76	5235	668	4	0	1	0	0	logfile
✔	9DNG	47040	2025-04-27	2024-09-17	3.52	2.45	3.46	2.0	0.003	0.63	0.0	0.04	16.58	0.00	2.221	7.46	0.35	6.1	93.9	0.0	-0.93	0.71	0.71	2.28	2.0	0.004	0.68	0.0	0.05	17.25	0.00	2.504	7.46	3.50	5.4	94.6	0.0	-0.56	0.35	0.71	0.71	1.99	5252	675	3	0	0	0	0	logfile
✔	9GSJ	51550	2025-04-29	2024-09-16	3.6	3.94	3.69	3.9	0.003	0.73	0.0	0.04	16.58	0.00	2.108	13.67	2.49	6.8	92.7	0.4	0.30	0.62	0.80	0.84	3.8	0.003	0.71	0.0	0.04	17.22	0.00	2.365	9.52	3.94	6.9	92.8	0.3	1.37	0.48	0.62	0.80	0.73	8870	1144	4	0	2	0	0	logfile
✔	9DMY	47020	2025-04-27	2024-09-16	2.8	2.57	2.75	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.003	0.68	0.0	0.05	18.24	0.00	2.635	13.66	2.56	6.0	94.0	0.0	-4.11	1.35	0.45	0.80	3.42	5550	690	5	0	0	0	0	logfile
✔	9JKQ	61567	2025-04-29	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.003	0.54	0.0	0.04	15.85	0.00	2.584	4.68	2.08	2.8	97.2	0.0	1.23	0.91	0.67	0.84	2.92	8386	1055	6	0	1	0	0	logfile
✔	9JKB	61550	2025-04-30	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.003	0.72	0.0	0.04	17.41	0.00	2.522	13.35	2.47	4.3	95.7	0.0	0.35	1.32	0.79	0.82	1.08	9532	1179	5	0	0	0	0	logfile
✔	9DME	47002	2025-04-26	2024-09-13	3.2	3.04	2.64	3.3	0.035	0.82	0.0	0.07	8.68	0.01	2.273	17.68	0.00	0.0	100.0	0.0	-0.67	0.34	0.70	5.54	3.3	0.062	0.77	0.0	0.07	10.99	0.01	2.381	11.19	0.74	2.1	97.9	0.0	-1.59	1.22	0.33	0.70	5.88	2475	315	45	0	45	0	0	logfile
✔	9JJ6	61517	2025-04-27	2024-09-13	2.94	3.09	2.94	3.1	0.007	0.66	0.0	0.04	28.52	0.00	2.241	8.01	0.73	2.2	97.8	0.0	0.54	0.70	0.86	2.93	3.1	0.002	0.54	0.0	0.04	16.84	0.00	2.541	6.55	1.61	2.1	97.9	0.0	1.38	0.79	0.70	0.86	3.25	6314	771	3	0	6	0	0	logfile
✔	9JJi	61528	2025-04-30	2024-09-13	3.4	2.52	3.40	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.003	0.63	0.0	0.05	14.85	0.00	2.529	4.36	2.49	2.3	97.7	0.0	-0.56	2.00	0.61	0.81	3.20	10021	1332	4	0	0	0	0	logfile
✔	9GRC	51520	2025-04-30	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.46	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.8	0.003	0.75	0.0	0.04	16.15	0.00	2.512	13.54	1.44	6.1	93.9	0.0	-0.95	1.58	0.48	0.19	0.85	9717	1263	6	0	2	0	0	logfile
✔	9JHP	61489	2025-04-29	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.68	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.1	0.003	0.65	0.0	0.04	16.09	0.00	2.385	5.75	3.48	4.2	95.8	0.0	0.11	0.47	0.75	0.75	1.63	8683	1129	5	0	0	0	0	logfile
✔	9GQo	51510	2025-04-28	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.81	0.0	0.04	18.37	0.00	1.979	17.49	3.18	6.1	93.9	0.0	-0.88	0.59	0.82	0.81	0.34	6716	880	2	0	3	0	0	logfile
✔	9JHJ	61484	2025-04-28	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.003	0.59	0.0	0.04	14.36	0.00	2.360	6.78	1.65	4.5	95.5	0.0	0.29	0.89	0.89	0.89	2.37	7761	1105	6	0	1	0	0	logfile
✔	9DK8	46946	2025-04-27	2024-09-08	3.3	3.83	3.42	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.003	0.64	0.0	0.04	17.09	0.01	2.400	7.75	1.49	5.3	94.7	0.0	-0.09	0.42	0.61	0.83	2.18	6678	858	6	0	0	0	0	logfile
✔	9JFY	61444	2025-04-29	2024-09-05	3.21	3.44	3.23	3.5	0.003	0.46	0.0	0.04	15.56	0.00	2.208	5.40	0.00	1.9	98.1	0.0	1.40	0.58	0.66	1.94	3.5	0.003	0.58	0.0	0.04	16.57	0.00	2.286	5.91	1.91	1.5	98.5	0.0	1.27	0.72	0.64	0.78	1.87	8805	1133	7	0	1	0	0	logfile
✔	9JFW	61442	2025-04-28	2024-09-05	3.13	2.26	3.17	2.1	0.003	0.62	1.0	0.04	16.74	0.00	2.156	10.42	0.48	4.8	95.2	0.0	-0.38	0.75	0.74	2.09	2.0	0.004	0.63	0.0	0.04	17.14	0.00	2.524	9.14	4.09	4.4	95.6	0.0	-0.19	0.49	0.77	0.76	1.91	7990	1037	5	0	0	0	0	logfile
✔	9JFX	61443	2025-04-28	2024-09-05	2.87	2.19	2.93	2.0	0.005	0.76	0.0	0.05	16.45	0.01	2.245	5.82	1.52	5.0	94.6	0.4	-0.14	0.76	0.77	2.43	2.0	0.003	0.59	0.0	0.04	17.34	0.00	2.526	3.88	4.79	3.1	96.9	0.0	0.73	0.40	0.79	0.79	2.32	8154	1053	5	0	0	0	0	logfile
✔	9JFZ	61445	2025-04-28	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.1	0.002	0.58	0.0	0.04	16.82	0.00	2.482	4.27	2.07	3.0	97.0	0.0	0.56	0.44	0.78	0.77	2.76	8198	1049	5	0	0	0	0	logfile
✔	9JG0	61446	2025-04-28	2024-09-05	2.91	3.16	2.93	3.2	0.003	0.51	0.0	0.04	14.67	0.00	2.239	8.63	0.13	1.9	98.1	0.0	0.72	0.56	0.64	2.97	3.2	0.005	0.68	0.0	0.04	16.58	0.00	2.589	8.63	4.53	2.1	97.9	0.0	1.12	1.69	0.63	0.79	2.71	7271	950	4	0	0	0	0	logfile
✔	9Dii	46906	2025-04-27	2024-09-05	4.0	4.29	4.06	4.1	0.008	0.89	0.0	0.04	27.18	0.00	2.190	46.50	0.00	0.0	0.0	0.0	—	0.83	0.84	—	4.1	0.008	0.93	0.0	0.04	26.46	0.01	2.456	30.04	0.00	0.0	0.0	0.0	—	0.93	0.84	0.85	—	3894	0	2	184	0	0	0	logfile

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