Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DiG	46905	2025-04-27	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.008	0.77	0.0	0.04	24.78	0.00	2.121	19.04	0.00	0.0	0.0	0.0	—	0.95	0.83	0.85	—	4066	0	4	192	6	0	0	logfile
✔	9JG0	61446	2025-04-28	2024-09-05	2.91	3.16	2.93	3.2	0.003	0.51	0.0	0.04	14.67	0.00	2.239	8.63	0.13	1.9	98.1	0.0	0.72	0.56	0.64	2.97	3.2	0.005	0.68	0.0	0.04	16.58	0.00	2.589	8.63	4.53	2.1	97.9	0.0	1.12	1.69	0.63	0.79	2.71	7271	950	4	0	0	0	0	logfile
✔	9JFZ	61445	2025-04-28	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.1	0.002	0.58	0.0	0.04	16.82	0.00	2.482	4.27	2.07	3.0	97.0	0.0	0.56	0.44	0.78	0.77	2.76	8198	1049	5	0	0	0	0	logfile
✔	9JF8	61430	2025-04-26	2024-09-04	3.05	3.21	2.98	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.004	0.76	0.0	0.04	15.88	0.00	2.477	3.36	3.16	9.2	90.8	0.0	-0.48	0.96	0.52	0.82	3.51	3266	395	2	0	1	0	0	logfile
✔	9GNQ	51477	2025-04-30	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9JDV	61399	2025-04-26	2024-09-01	3.32	3.91	3.55	3.9	0.013	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.004	0.74	0.0	0.04	16.35	0.00	2.281	10.48	4.06	2.6	97.4	0.0	1.92	1.08	0.48	0.73	1.28	3311	435	2	0	1	1	0	logfile
✔	9JE0	61403	2025-04-26	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.70	0.0	0.04	15.99	0.00	2.607	8.81	2.03	2.6	97.4	0.0	2.02	0.63	0.44	0.71	1.00	3321	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-04-27	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.66	0.0	0.04	17.75	0.00	2.608	3.80	1.27	1.6	98.4	0.0	0.36	0.20	0.70	0.86	3.95	6592	808	4	0	2	0	0	logfile
✔	9JCV	61377	2025-04-27	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.40	0.00	2.618	9.76	0.69	2.0	98.0	0.0	1.15	1.04	0.51	0.74	0.67	4111	512	2	0	4	0	0	logfile
✔	9JCZ	61378	2025-04-27	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.002	0.62	0.0	0.04	14.45	0.00	2.310	6.29	0.45	2.3	97.7	0.0	1.32	0.42	0.51	0.72	1.46	4364	525	2	0	11	2	0	logfile
✔	9JCE	61362	2025-04-27	2024-08-29	3.59	3.76	3.56	3.7	0.004	0.59	0.0	0.04	15.14	0.00	2.244	7.11	0.00	4.9	95.1	0.0	-0.51	0.71	0.81	1.24	3.7	0.003	0.61	0.0	0.04	16.69	0.00	2.504	8.65	2.86	5.2	94.8	0.0	1.31	1.02	0.73	0.82	1.15	5511	695	3	0	9	0	0	logfile
✔	9GMD	51448	2025-04-30	2024-08-28	4.0	4.41	4.02	4.2	0.004	0.61	0.0	0.03	16.62	0.01	1.992	9.49	0.19	3.5	96.5	0.0	1.67	0.85	0.78	—	4.2	0.003	0.57	0.0	0.03	17.30	0.00	2.319	6.46	2.42	2.9	97.1	0.0	2.39	0.82	0.84	0.80	—	9919	611	6	0	0	0	4925	logfile
✔	9JBo	61321	2025-04-26	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.005	0.82	0.0	0.06	18.87	0.00	2.547	8.01	4.35	13.4	86.6	0.0	-2.23	1.04	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBP	61322	2025-04-26	2024-08-27	3.18	2.96	1.87	4.1	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.003	0.58	0.0	0.05	17.44	0.00	2.560	6.57	7.53	3.0	97.0	0.0	-1.64	1.16	0.32	0.70	2.98	2022	246	12	0	48	0	0	logfile
✔	9JAZ	61302	2025-04-26	2024-08-26	3.0	3.25	2.18	3.3	0.004	0.52	0.0	0.05	15.94	0.00	2.622	5.31	0.00	3.4	96.6	0.0	-0.70	0.56	0.87	7.33	3.3	0.004	0.55	0.0	0.06	16.70	0.00	2.689	6.64	2.43	4.0	96.0	0.0	-0.77	0.29	0.50	0.86	7.12	3012	396	24	0	12	0	0	logfile
✔	9JB0	61303	2025-04-26	2024-08-26	2.9	3.06	2.31	3.1	0.004	0.40	0.0	0.06	18.89	0.00	2.623	6.97	0.69	6.9	93.1	0.0	-0.14	0.62	0.87	7.08	3.1	0.003	0.42	0.0	0.06	18.46	0.00	2.628	7.47	0.69	3.7	96.3	0.0	-0.27	0.85	0.60	0.87	6.97	3012	396	24	0	12	0	0	logfile
✔	9JB2	61305	2025-04-26	2024-08-26	2.9	2.11	2.74	3.0	0.003	0.43	0.0	0.05	12.57	0.00	2.256	5.91	0.27	0.9	99.1	0.0	-2.12	0.45	0.82	4.81	3.0	0.005	0.57	0.0	0.05	16.97	0.00	2.505	6.68	3.51	2.3	97.7	0.0	-2.29	0.32	0.40	0.81	4.92	3890	500	35	0	20	0	0	logfile
✔	9JB1	61304	2025-04-26	2024-08-26	2.5	2.55	2.32	2.6	0.001	0.60	0.0	0.06	19.34	0.00	2.660	7.64	0.00	0.0	100.0	0.0	-0.86	0.66	0.90	6.53	2.6	0.005	0.61	0.0	0.06	18.93	0.00	2.636	4.98	1.39	2.6	97.4	0.0	-1.18	0.88	0.66	0.91	7.47	3012	396	24	0	12	0	0	logfile
✔	9JAQ	61300	2025-04-27	2024-08-25	2.99	3.16	2.98	3.2	0.005	0.63	0.0	0.04	14.52	0.00	2.200	9.72	0.29	7.7	91.8	0.5	-3.44	0.71	0.79	3.90	3.2	0.004	0.63	0.0	0.04	17.24	0.00	2.529	7.45	3.37	5.9	94.1	0.0	-0.64	1.77	0.67	0.81	3.50	5998	736	2	0	0	0	0	logfile
✔	9JA6	61291	2025-04-27	2024-08-24	4.4	3.40	4.32	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.003	0.63	0.0	0.04	13.21	0.00	2.395	8.40	0.00	1.2	98.8	0.0	3.19	1.55	0.71	0.77	—	4880	588	4	0	0	0	0	logfile

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