Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JA6	61291	2025-04-27	2024-08-24	4.4	3.40	4.32	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.003	0.63	0.0	0.04	13.21	0.00	2.395	8.40	0.00	1.2	98.8	0.0	3.19	1.55	0.71	0.77	—	4880	588	4	0	0	0	0	logfile
✔	9J98	61255	2025-04-28	2024-08-22	3.33	3.60	3.39	3.6	0.010	1.10	12.0	0.07	19.13	0.02	2.236	14.07	8.66	10.3	89.4	0.3	-3.04	0.60	0.84	1.66	3.6	0.003	0.59	0.0	0.04	16.70	0.00	2.613	7.22	5.68	7.8	92.2	0.0	0.93	0.50	0.57	0.83	1.74	6752	794	4	0	4	0	0	logfile
✔	9DAK	46691	2025-04-28	2024-08-22	2.4	2.74	2.43	2.6	0.014	1.29	0.0	0.09	13.17	0.00	1.935	1.68	0.47	1.5	98.5	0.0	0.51	0.78	0.84	4.93	2.6	0.003	0.68	0.0	0.05	14.12	0.00	2.327	1.90	0.78	1.1	98.9	0.0	1.95	0.45	0.74	0.85	4.33	7303	899	13	0	23	144	0	logfile
✔	9J97	61254	2025-04-28	2024-08-22	3.3	3.54	3.13	3.6	0.014	1.86	15.0	0.09	19.36	0.01	2.155	12.71	12.25	6.8	92.2	0.9	-4.11	0.68	0.86	2.08	3.6	0.003	0.63	0.0	0.04	16.75	0.00	2.613	4.46	4.76	4.7	95.3	0.0	0.34	0.45	0.58	0.82	2.77	6704	786	4	0	6	0	0	logfile
✔	9DAX	46701	2025-04-27	2024-08-22	3.3	3.53	3.10	3.6	0.010	1.23	3.0	0.07	17.64	0.01	0.912	17.62	0.72	4.5	95.1	0.4	-2.15	0.60	0.66	2.32	3.5	0.006	1.16	1.0	0.06	17.68	0.01	1.885	15.87	3.02	6.6	93.3	0.1	-2.15	1.34	0.61	0.69	1.74	6401	825	4	0	7	6	0	logfile
✔	9DAo	46695	2025-04-30	2024-08-22	2.8	3.05	2.81	3.1	0.008	0.97	0.0	0.05	16.57	0.01	1.978	6.22	2.59	4.5	95.4	0.2	-0.40	0.66	0.82	3.69	3.1	0.004	0.69	0.0	0.05	16.69	0.01	1.998	5.13	2.96	4.5	95.4	0.2	-0.42	0.33	0.68	0.85	3.94	9804	1264	6	0	6	0	0	logfile
✔	9J8P	61237	2025-04-28	2024-08-21	3.21	3.65	—	1.5	0.007	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.003	0.72	0.0	0.04	21.59	0.00	2.339	12.29	1.35	3.9	96.1	0.0	0.24	2.59	0.93	0.86	1.50	7061	623	3	106	1	0	0	logfile
✔	9J8C	61227	2025-04-27	2024-08-21	2.9	3.01	2.81	3.1	0.003	0.67	0.0	0.05	15.96	0.00	2.275	6.00	0.00	2.6	97.4	0.0	1.43	0.60	0.86	2.38	3.1	0.002	0.50	0.0	0.04	16.43	0.00	2.331	3.28	1.75	2.2	97.6	0.2	2.40	0.32	0.66	0.89	2.02	4418	543	3	0	6	14	0	logfile
✔	9J8Z	61249	2025-04-29	2024-08-21	3.36	4.09	3.52	3.9	0.004	0.79	0.0	0.05	17.03	0.01	2.128	12.58	1.42	5.4	94.6	0.0	-0.36	0.66	0.79	1.74	3.9	0.003	0.67	0.0	0.04	16.99	0.00	2.404	6.68	4.70	4.5	95.5	0.0	0.39	0.90	0.70	0.84	1.69	8611	1121	5	0	0	0	0	logfile
✔	9J8B	61226	2025-04-27	2024-08-21	3.9	4.08	3.83	4.0	0.003	0.64	0.0	0.04	14.29	0.00	2.219	9.07	0.00	6.6	93.4	0.0	0.04	0.58	0.81	1.05	4.0	0.003	0.66	0.0	0.04	16.87	0.00	2.587	6.29	1.82	6.6	93.4	0.0	0.80	1.31	0.58	0.82	0.91	4158	524	1	0	0	0	0	logfile
✔	9J7M	61207	2025-04-27	2024-08-19	2.82	3.08	2.92	3.1	0.006	0.82	0.0	0.06	15.91	0.01	2.205	4.34	3.43	3.0	97.0	0.0	1.19	0.62	0.87	3.49	3.1	0.003	0.53	0.0	0.04	15.11	0.00	2.301	3.15	2.15	2.4	97.6	0.0	1.71	0.88	0.54	0.83	3.30	4552	543	2	0	12	15	0	logfile
✔	9D8P	46645	2025-04-27	2024-08-19	3.2	3.70	3.12	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.52	0.0	0.04	15.74	0.00	2.493	5.89	3.15	2.3	97.7	0.0	0.23	0.18	0.79	0.84	3.18	4073	537	4	0	0	0	0	logfile
✔	9J7o	61209	2025-04-27	2024-08-19	2.77	2.99	2.82	3.0	0.006	0.79	0.0	0.05	16.11	0.01	2.292	5.95	5.31	2.3	97.7	0.0	0.97	0.63	0.86	2.66	3.0	0.003	0.55	0.0	0.04	15.70	0.00	2.626	3.66	2.65	2.1	97.9	0.0	1.59	0.33	0.62	0.86	2.66	4344	533	2	0	6	10	0	logfile
✔	9J7V	61211	2025-04-26	2024-08-19	3.3	3.54	3.37	3.6	0.007	0.97	0.0	0.04	16.85	0.00	2.210	2.17	0.00	4.6	95.4	0.0	1.94	0.60	0.84	1.45	3.6	0.003	0.48	0.0	0.04	16.06	0.00	2.634	1.84	0.65	3.1	96.9	0.0	2.02	0.24	0.58	0.85	1.59	2975	352	2	0	8	0	0	logfile
✔	9J7N	61208	2025-04-27	2024-08-19	3.14	3.44	3.25	3.5	0.006	0.83	1.0	0.06	17.16	0.01	2.229	6.75	2.16	4.5	95.5	0.0	0.85	0.47	0.79	2.15	3.5	0.003	0.53	1.0	0.04	16.87	0.00	2.612	4.14	2.16	4.1	95.9	0.0	1.15	0.25	0.56	0.84	2.35	4517	544	3	0	11	5	0	logfile
✔	9D85	46630	2025-04-28	2024-08-18	3.59	3.91	3.63	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.003	0.82	0.0	0.04	21.53	0.00	2.195	16.56	2.44	4.2	95.8	0.0	-1.31	1.59	0.74	0.58	0.76	7201	739	5	65	0	0	0	logfile
✔	9D7K	46607	2025-04-26	2024-08-16	3.0	2.55	3.03	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.004	0.89	0.0	0.05	18.71	0.01	2.501	18.53	4.15	4.8	95.2	0.0	0.39	1.35	0.66	0.72	1.98	2843	359	1	0	0	0	0	logfile
✔	9J66	61167	2025-04-27	2024-08-15	3.55	3.77	3.46	3.8	0.003	0.55	0.0	0.04	12.70	0.00	2.298	7.69	0.00	5.8	94.2	0.0	-2.15	0.55	0.72	2.49	3.8	0.003	0.61	0.0	0.04	14.77	0.00	2.533	8.34	3.82	5.8	94.2	0.0	-1.69	0.42	0.56	0.73	2.25	4044	559	4	0	0	0	0	logfile
✔	9D6F	46596	2025-04-27	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.003	0.71	0.0	0.04	13.80	0.00	2.556	6.66	0.00	7.7	92.3	0.0	-2.20	0.49	0.68	0.77	—	4672	610	5	0	0	0	0	logfile
✔	9GH4	51346	2025-04-27	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.005	0.74	0.0	0.05	17.68	0.00	2.482	14.92	5.47	7.8	92.2	0.0	-3.54	1.08	0.75	0.74	2.29	5454	750	3	0	0	0	0	logfile

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