Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R1G	18810	2024-05-16	2023-11-01	3.99	4.21	4.01	4.0	0.006	0.92	0.0	0.06	11.49	0.01	1.603	1.35	0.27	2.2	97.8	0.0	-0.72	0.69	0.55	0.61	4.1	0.003	0.61	0.0	0.04	15.47	0.00	1.962	11.79	2.50	3.4	96.6	0.0	0.50	1.43	0.75	0.67	0.88	33258	2050	10	0	6	0	16526	logfile
✔	8WZB	37949	2024-05-11	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.005	0.76	0.0	0.05	17.95	0.01	2.105	15.72	4.59	4.8	95.1	0.1	-0.72	1.02	0.81	0.81	2.24	17594	2181	11	0	0	0	0	logfile
✔	8UU6	42561	2024-05-17	2023-10-31	3.3	3.74	—	3.5	0.006	0.66	0.0	0.04	22.99	0.01	1.900	8.58	0.06	7.1	92.8	0.1	-1.52	0.82	0.86	2.68	3.5	0.002	0.57	0.0	0.03	22.79	0.00	1.940	8.10	3.73	4.8	95.1	0.1	-0.84	0.88	0.82	0.87	2.10	136923	5269	62	4614	103	5	0	logfile
✔	8UTB	42537	2024-05-16	2023-10-30	2.3	2.35	2.26	2.3	0.012	0.91	0.0	0.05	18.53	0.01	2.278	5.81	0.29	2.4	97.6	0.0	-2.18	0.66	0.80	4.74	2.4	0.004	0.61	0.0	0.04	15.59	0.00	1.902	7.10	0.35	2.4	97.6	0.0	0.33	1.19	0.63	0.81	4.93	31440	1875	25	0	50	60	15105	logfile
✔	8USX	42522	2024-05-11	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.003	0.64	0.0	0.04	11.32	0.00	2.177	9.34	0.00	7.3	92.2	0.5	-0.05	0.95	0.66	0.64	—	17926	2967	4	0	0	0	0	logfile
✔	8WYC	37923	2024-05-12	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.003	0.58	0.0	0.04	18.89	0.00	2.120	12.42	4.87	3.3	96.7	0.0	0.21	0.40	0.72	0.87	2.71	22385	2680	10	0	4	0	0	logfile
✔	8WYB	37922	2024-05-17	2023-10-30	3.37	3.64	3.48	3.6	0.005	0.82	0.0	0.04	18.62	0.00	2.015	16.50	0.51	3.2	96.8	0.0	-0.12	0.73	0.75	1.39	3.6	0.003	0.60	0.0	0.04	18.15	0.00	2.162	13.06	2.21	3.5	96.5	0.0	0.15	0.50	0.77	0.83	1.44	35604	4259	12	0	4	0	0	logfile
✔	8USW	42520	2024-05-11	2023-10-30	4.23	4.51	4.26	4.3	0.008	0.77	1.0	0.05	12.06	0.00	1.827	14.52	1.10	9.3	90.3	0.4	-0.41	0.70	0.72	—	4.3	0.002	0.58	0.0	0.04	11.73	0.00	2.173	7.58	0.00	6.7	93.1	0.3	-0.16	0.37	0.71	0.73	—	17975	2942	6	0	2	0	0	logfile
✔	8WY4	37915	2024-05-10	2023-10-30	2.81	2.99	2.90	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.003	0.69	0.0	0.04	17.56	0.00	2.176	6.20	1.87	3.9	96.1	0.0	0.03	0.53	0.68	0.79	2.37	14864	1804	8	0	4	0	0	logfile
✔	8WYE	37925	2024-05-12	2023-10-30	2.49	3.06	2.66	3.0	0.003	0.52	0.0	0.04	18.24	0.00	2.044	9.50	4.05	1.8	98.2	0.0	0.91	0.78	0.83	3.41	3.0	0.004	0.68	0.0	0.04	18.02	0.00	1.274	10.52	3.28	1.7	98.3	0.0	1.21	0.28	0.66	0.82	3.40	21232	2553	5	0	0	0	0	logfile
✔	8WYD	37924	2024-05-16	2023-10-30	2.56	2.93	2.97	3.0	0.003	0.58	0.0	0.04	18.49	0.00	2.060	11.99	2.68	1.8	98.2	0.0	0.68	0.62	0.73	2.28	3.0	0.003	0.58	0.0	0.04	18.58	0.00	2.079	10.50	3.40	2.2	97.8	0.0	1.09	0.76	0.67	0.84	2.55	33765	4043	6	0	0	0	0	logfile
✔	8UT1	42526	2024-05-16	2023-10-30	2.3	2.36	2.25	2.3	0.011	0.85	0.0	0.05	19.18	0.01	2.264	3.14	0.56	3.3	96.7	0.0	0.14	0.66	0.83	4.99	2.4	0.002	0.49	0.0	0.04	15.79	0.00	2.285	6.89	0.62	0.8	99.2	0.0	1.86	1.60	0.66	0.85	4.78	33140	1970	25	0	60	45	15845	logfile
✔	8WYA	37921	2024-05-16	2023-10-30	3.62	3.98	3.81	11.0	0.003	0.71	0.0	0.04	18.13	0.00	2.026	16.09	1.67	3.4	96.6	0.0	-0.20	0.54	0.16	0.16	3.6	0.003	0.78	0.0	0.04	18.69	0.00	2.077	22.41	2.78	4.9	95.1	0.0	-0.95	1.26	0.60	0.30	0.12	32621	3910	6	0	0	0	0	logfile
✔	8WY5	37916	2024-05-10	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.005	1.00	2.0	0.06	19.83	0.01	2.119	14.83	2.15	7.7	91.9	0.5	-1.79	1.05	0.66	0.77	1.96	16038	1770	12	76	4	0	0	logfile
✔	8WY9	37920	2024-05-11	2023-10-30	2.57	3.04	2.67	2.9	0.002	0.51	0.0	0.04	17.96	0.00	2.086	9.74	3.47	1.8	98.2	0.0	0.70	0.84	0.89	3.35	2.9	0.005	0.73	1.0	0.04	17.70	0.00	1.848	10.96	2.93	1.8	98.2	0.0	1.28	0.37	0.78	0.87	3.12	20129	2419	4	0	0	0	0	logfile
✔	8WYF	37926	2024-05-12	2023-10-30	2.85	3.14	2.98	3.1	0.004	0.55	0.0	0.04	18.78	0.00	1.949	35.35	3.37	2.2	97.8	0.0	1.33	0.71	0.84	3.20	3.1	0.003	0.54	0.0	0.04	18.33	0.00	2.155	10.90	2.56	1.6	98.4	0.0	1.00	0.36	0.71	0.84	2.97	21408	2553	9	0	4	0	0	logfile
✔	8WX4	37900	2024-05-07	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.002	0.53	0.0	0.04	15.41	0.00	2.217	6.37	1.40	2.9	97.1	0.0	1.74	1.31	0.58	0.82	2.16	7512	976	6	0	0	0	0	logfile
✔	8WX2	37898	2024-05-07	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.171	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.87	0.0	0.05	16.84	0.01	2.098	14.57	3.56	8.0	92.0	0.0	0.50	0.66	0.60	0.75	0.81	6800	880	2	0	0	0	0	logfile
✔	8WX5	37901	2024-05-06	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.003	0.68	0.0	0.04	17.34	0.00	2.115	16.02	2.24	7.0	93.0	0.0	1.05	1.01	0.51	0.81	0.96	3857	504	2	0	0	0	0	logfile
✔	8WX3	37899	2024-05-07	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.002	0.57	0.0	0.04	15.21	0.00	2.273	7.05	2.17	2.8	97.0	0.2	1.89	1.32	0.55	0.83	2.54	7498	974	2	0	0	0	0	logfile

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