Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WoR	37696	2024-05-08	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.005	0.93	1.0	0.05	15.14	0.00	1.898	7.18	3.79	4.7	95.1	0.2	0.85	0.90	0.64	0.84	3.02	11218	1294	10	0	35	4	0	logfile
✔	8WoM	37692	2024-05-08	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.63	0.0	0.04	13.91	0.00	2.164	5.39	1.94	7.0	93.0	0.0	-3.03	0.72	0.66	0.82	1.77	9348	1217	2	0	1	0	0	logfile
✔	8UGY	42241	2024-05-07	2023-10-06	3.31	3.49	3.30	3.5	0.004	0.65	0.0	0.04	14.51	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.004	0.59	0.0	0.04	15.10	0.00	2.128	8.49	2.16	3.3	96.6	0.1	0.75	1.10	0.65	0.83	2.32	6970	864	5	0	6	1	0	logfile
✔	8UH4	42246	2024-05-11	2023-10-06	3.72	4.54	4.34	4.4	0.008	0.78	0.0	0.05	15.20	0.01	2.146	13.85	0.00	2.4	97.2	0.5	-2.44	0.80	0.84	3.98	4.4	0.005	0.92	1.0	0.04	17.87	0.00	1.719	16.02	3.97	4.2	95.8	0.0	-2.00	0.64	0.76	0.79	3.44	110100	12780	120	540	0	0	0	logfile
✔	8UGS	42234	2024-05-09	2023-10-06	3.2	3.34	3.06	3.6	0.003	0.53	0.0	0.04	17.88	0.00	2.028	5.60	0.20	3.3	96.6	0.1	1.44	0.86	0.84	1.76	3.5	0.003	0.55	0.0	0.04	18.22	0.00	1.936	7.91	2.10	3.8	96.2	0.1	1.27	0.50	0.86	0.84	1.91	13961	1701	6	0	8	0	0	logfile
✔	8QR0	18610	2024-05-09	2023-10-06	2.5	2.61	2.54	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.002	0.58	0.0	0.04	15.24	0.00	2.238	5.90	1.02	1.6	98.4	0.0	2.11	0.34	0.71	0.89	3.46	11598	1360	15	0	41	145	0	logfile
✔	8UH3	42245	2024-05-07	2023-10-06	3.31	3.52	3.29	3.5	0.005	0.63	0.0	0.04	13.68	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.003	0.60	0.0	0.04	15.19	0.00	2.139	11.47	3.28	2.8	97.2	0.0	0.45	2.18	0.68	0.83	2.50	8759	1098	7	0	5	1	0	logfile
✔	8QQU	18605	2024-05-08	2023-10-06	2.9	3.10	2.97	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.61	0.0	0.04	18.25	0.00	2.256	6.80	2.15	2.8	97.2	0.0	0.90	1.39	0.66	0.88	3.32	10715	1273	4	32	0	0	0	logfile
✔	8Wo7	37681	2024-05-07	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.57	0.0	0.04	15.01	0.00	2.153	7.63	1.75	3.7	96.3	0.0	2.04	0.35	0.62	0.86	2.20	8118	1080	4	0	4	0	0	logfile
✔	8UGB	42220	2024-05-09	2023-10-05	3.0	3.67	3.01	3.4	0.015	0.83	0.0	0.05	16.73	0.01	1.862	7.91	1.27	5.1	94.6	0.3	0.78	0.90	0.88	3.17	3.4	0.003	0.59	0.0	0.04	16.64	0.00	1.904	8.80	1.40	5.1	94.6	0.3	1.23	0.30	0.90	0.87	2.93	13726	1669	6	0	8	0	0	logfile
✔	8WMQ	37658	2024-05-10	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.01	0.0	0.04	14.58	0.01	1.949	6.15	1.28	6.4	93.6	0.0	0.82	0.99	0.63	0.84	1.48	16348	1080	6	0	6	0	8208	logfile
✔	8UFB	42190	2024-05-16	2023-10-04	3.89	4.22	4.06	4.2	0.003	0.57	0.0	0.05	10.02	0.01	2.207	1.76	0.00	2.5	97.5	0.0	0.76	0.53	0.64	2.08	4.2	0.005	0.68	1.0	0.05	14.11	0.00	1.955	10.17	2.64	4.0	96.0	0.0	0.38	2.03	0.52	0.75	2.28	34656	4476	36	0	20	0	0	logfile
✔	8UFi	42208	2024-05-09	2023-10-04	3.1	3.94	3.11	3.5	0.003	0.55	0.0	0.04	17.77	0.00	1.947	7.98	0.19	3.5	96.3	0.2	1.71	0.93	0.89	2.83	3.5	0.004	0.55	0.0	0.04	17.96	0.00	1.904	8.54	1.35	3.8	96.0	0.2	1.80	1.82	0.92	0.88	2.36	14157	1734	6	0	6	0	0	logfile
✔	8UFC	42192	2024-05-16	2023-10-04	3.09	3.36	3.20	3.4	0.003	0.65	0.0	0.05	9.95	0.01	2.186	1.79	0.00	2.3	97.7	0.0	0.74	0.61	0.73	3.76	3.4	0.006	0.64	0.0	0.05	13.45	0.00	2.059	6.15	2.24	3.6	96.4	0.0	0.32	0.55	0.57	0.81	3.35	33624	4336	28	0	16	0	0	logfile
✔	8UFA	42188	2024-05-15	2023-10-04	2.86	3.10	3.12	3.1	0.004	0.68	0.0	0.05	9.39	0.01	2.262	1.20	0.00	1.9	98.0	0.0	0.89	0.62	0.74	4.33	3.1	0.002	0.53	0.0	0.04	13.89	0.00	2.182	6.53	2.16	2.2	97.8	0.0	0.88	1.21	0.61	0.81	3.55	31260	4024	20	0	8	0	0	logfile
✔	8UFG	42206	2024-05-08	2023-10-04	3.1	3.39	3.15	3.4	0.008	0.93	0.0	0.14	16.01	0.00	1.993	9.29	0.11	2.0	98.0	0.0	1.04	0.62	0.85	2.46	3.4	0.003	0.65	0.0	0.07	15.91	0.00	2.224	9.34	1.05	2.2	97.8	0.0	0.88	1.21	0.54	0.84	2.51	9107	1120	6	0	2	0	0	logfile
✔	8UFH	42207	2024-05-08	2023-10-04	3.2	3.52	3.27	3.5	0.009	0.91	0.0	0.15	16.70	0.02	1.977	9.69	0.00	2.4	97.6	0.0	1.00	0.61	0.84	2.89	3.5	0.004	0.67	0.0	0.07	17.44	0.00	2.086	9.85	2.10	1.9	98.1	0.0	0.61	0.88	0.53	0.83	2.40	9128	1120	5	0	2	0	0	logfile
✔	8QPR	18560	2024-05-06	2023-10-03	3.8	4.06	3.79	4.0	0.006	0.89	0.0	0.05	17.70	0.01	2.246	8.76	0.16	12.6	87.4	0.0	-3.38	0.74	0.84	3.62	4.0	0.004	0.73	0.0	0.05	14.59	0.00	2.264	8.23	3.95	9.6	90.4	0.0	-2.55	0.48	0.75	0.84	2.91	5787	723	9	0	15	0	0	logfile
✔	8QQ0	18571	2024-05-06	2023-10-03	3.5	3.77	3.46	3.7	0.005	0.79	0.0	0.05	20.44	0.00	2.161	6.62	0.00	9.7	90.2	0.1	-3.12	0.75	0.86	4.12	3.7	0.003	0.64	0.0	0.04	14.83	0.00	2.236	5.26	4.42	7.6	92.4	0.0	-2.26	0.34	0.75	0.84	3.45	5677	715	9	0	14	0	0	logfile
✔	8UF0	42181	2024-05-14	2023-10-03	2.02	2.34	2.08	2.2	0.007	0.76	0.0	0.05	17.50	0.01	0.013	4.37	0.54	1.8	98.2	0.0	0.09	0.84	0.89	5.17	2.2	0.003	0.62	0.0	0.05	17.90	0.01	2.125	3.00	1.19	1.1	98.9	0.0	1.26	0.34	0.82	0.88	4.15	27000	3456	48	0	0	804	0	logfile

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