Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VV3	43548	2024-05-09	2024-01-30	2.61	2.94	2.71	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.003	0.55	0.0	0.04	16.90	0.00	2.104	10.87	4.07	4.5	95.5	0.0	2.74	1.15	0.59	0.75	2.15	12172	1548	8	0	4	0	0	logfile
✔	8RU2	19503	2024-05-10	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.62	0.0	0.04	18.18	0.00	1.963	11.45	3.30	4.5	95.4	0.2	0.04	1.00	0.72	0.76	0.78	14773	1849	8	0	6	0	0	logfile
✔	8RU0	19501	2024-05-09	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.83	1.0	0.05	16.38	0.00	1.976	6.66	3.62	3.7	96.2	0.1	-0.40	1.30	0.63	0.82	2.38	11660	1476	8	0	11	0	0	logfile
✔	8RTT	19496	2024-05-11	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.317	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.004	0.74	1.0	0.05	16.55	0.00	1.911	7.82	2.40	3.0	97.0	0.0	0.73	0.36	0.79	0.86	1.67	18155	2274	13	0	14	0	0	logfile
✔	8VUW	43542	2024-05-09	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.52	0.0	0.04	16.49	0.00	2.153	8.86	1.43	3.3	96.7	0.0	-0.70	0.31	0.65	0.82	3.30	13055	1560	10	0	5	0	0	logfile
✔	8Y1D	38832	2024-05-16	2024-01-24	2.7	2.85	2.79	2.8	0.011	1.04	1.0	0.07	17.06	0.01	2.238	6.62	13.49	10.0	89.9	0.0	-3.70	0.54	0.53	2.78	2.8	0.003	0.64	0.0	0.04	15.44	0.00	2.149	7.48	3.71	6.4	93.6	0.0	-1.40	1.25	0.71	0.84	2.58	34921	4314	23	0	93	0	0	logfile
✔	8Y1G	38835	2024-05-15	2024-01-24	2.99	3.22	3.09	3.1	0.010	0.98	0.0	0.06	16.47	0.01	2.222	4.94	12.14	8.0	92.0	0.0	-4.04	0.66	0.67	2.48	3.1	0.004	0.63	0.0	0.05	15.20	0.01	2.141	8.18	3.91	5.9	94.1	0.0	-1.36	1.22	0.74	0.81	2.31	29541	3624	21	0	93	0	0	logfile
✔	8Y1F	38834	2024-05-15	2024-01-24	2.8	3.01	2.88	3.0	0.005	0.76	0.0	0.05	14.27	0.01	2.272	2.00	6.87	4.6	95.3	0.0	-2.79	0.65	0.72	3.57	3.0	0.003	0.58	0.0	0.04	14.18	0.00	2.143	4.21	3.11	3.9	96.1	0.0	-0.52	0.51	0.75	0.87	3.15	29541	3624	21	0	93	0	0	logfile
✔	8Y1A	38829	2024-05-15	2024-01-24	2.8	2.97	2.85	2.9	0.010	1.01	0.0	0.07	16.23	0.01	2.013	3.57	11.34	6.6	93.2	0.2	-3.08	0.62	0.66	3.09	2.9	0.003	0.74	2.0	0.05	15.59	0.01	2.140	5.39	4.22	5.1	94.9	0.0	-0.79	1.21	0.74	0.84	2.75	29541	3624	21	0	93	0	0	logfile
✔	8Y1E	38833	2024-05-17	2024-01-24	2.7	2.89	2.81	2.9	0.010	1.07	0.0	0.07	17.71	0.01	2.244	7.62	15.59	11.3	88.6	0.2	-4.10	0.54	0.52	2.18	2.8	0.004	0.73	0.0	0.05	16.28	0.00	2.125	9.69	5.26	8.2	91.8	0.0	-2.03	0.78	0.68	0.79	1.95	37611	4659	24	0	93	0	0	logfile
✔	8Y1H	38836	2024-05-15	2024-01-24	3.16	3.42	3.30	3.2	0.006	0.94	0.0	0.05	17.12	0.01	2.224	6.06	15.19	8.0	92.0	0.0	-4.56	0.62	0.55	1.14	3.2	0.003	0.67	1.0	0.05	15.53	0.00	1.994	11.72	5.36	7.5	92.5	0.0	-2.11	1.29	0.70	0.70	1.02	29541	3624	21	0	93	0	0	logfile
✔	8Y1B	38830	2024-05-15	2024-01-24	2.8	3.01	2.88	3.0	0.007	0.85	0.0	0.07	15.65	0.01	2.273	3.23	9.92	6.0	94.0	0.0	-3.12	0.63	0.67	2.78	3.0	0.004	0.64	0.0	0.05	14.99	0.01	1.960	5.40	4.13	5.4	94.6	0.0	-0.85	0.52	0.75	0.86	2.34	29541	3624	21	0	93	0	0	logfile
✔	8Y1C	38831	2024-05-15	2024-01-24	2.8	2.97	2.92	2.9	0.007	0.88	0.0	0.06	15.95	0.01	2.257	4.54	11.49	6.9	93.1	0.0	-3.39	0.60	0.57	1.86	2.9	0.004	0.65	0.0	0.05	15.25	0.00	2.140	8.55	5.39	6.4	93.6	0.0	-1.31	0.56	0.71	0.78	1.57	29541	3624	21	0	93	0	0	logfile
✔	8Y19	38828	2024-05-15	2024-01-24	2.3	2.48	2.41	2.5	0.006	0.83	0.0	0.06	14.35	0.01	2.279	1.52	6.19	4.3	95.7	0.0	-1.92	0.57	0.64	4.23	2.5	0.003	0.66	0.0	0.05	14.54	0.00	2.204	3.37	3.08	3.8	96.2	0.0	-0.18	1.22	0.75	0.86	3.99	29541	3624	21	0	93	0	0	logfile
✔	8RRR	19462	2024-05-06	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.007	0.77	0.0	0.06	15.56	0.00	2.223	11.23	4.89	11.2	88.8	0.0	-4.28	1.53	0.42	0.79	5.21	4925	735	10	0	0	0	0	logfile
✔	8XZG	38795	2024-05-07	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	3.6	0.002	0.55	0.0	0.04	15.76	0.00	2.199	5.96	2.20	2.9	97.1	0.0	-0.20	0.43	0.57	0.76	1.56	7172	919	5	0	0	0	0	logfile
✔	8XZF	38794	2024-05-08	2024-01-21	3.0	2.18	—	2.9	0.007	0.72	1.0	0.05	12.98	0.00	2.091	9.31	0.51	4.3	95.5	0.2	-2.36	0.79	0.81	4.27	2.9	0.003	0.59	0.0	0.04	15.71	0.00	2.092	9.25	2.25	3.9	96.0	0.1	0.39	0.51	0.80	0.83	3.26	9062	1161	6	0	1	0	0	logfile
✔	8XZH	38796	2024-05-08	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.003	0.56	0.0	0.04	16.22	0.00	2.174	7.47	2.55	2.0	98.0	0.0	1.09	0.94	0.77	0.85	3.93	9048	1159	6	0	0	0	0	logfile
✔	8XZJ	38798	2024-05-08	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.003	0.61	0.0	0.04	15.07	0.00	2.108	8.64	2.12	2.2	97.7	0.1	1.10	1.18	0.73	0.80	3.13	9106	1162	6	0	0	0	0	logfile
✔	8RQF	19440	2024-05-07	2024-01-18	3.41	3.69	3.47	3.7	0.004	0.67	0.0	0.04	16.11	0.00	2.216	9.23	0.26	4.7	95.3	0.0	-0.42	0.63	0.83	2.35	3.7	0.003	0.54	0.0	0.04	16.36	0.00	2.209	7.29	2.59	5.4	94.6	0.0	-0.29	0.29	0.63	0.83	2.31	6950	903	7	0	1	1	0	logfile

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