Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XQB	38572	2024-05-13	2024-01-05	4.07	4.73	4.19	4.3	0.003	0.60	0.0	0.04	13.14	0.00	2.115	20.55	4.85	9.5	90.1	0.3	-0.97	0.64	0.83	—	4.3	0.004	0.77	0.0	0.04	13.18	0.01	2.044	23.89	0.06	10.2	89.5	0.3	-1.22	1.21	0.64	0.82	—	118514	15222	71	0	0	0	0	logfile
✔	8XPM	38556	2024-05-13	2024-01-04	3.9	4.61	4.11	4.1	0.008	0.58	0.0	0.04	15.59	0.00	1.879	21.26	6.47	8.7	90.9	0.4	-1.09	0.75	0.80	0.67	4.1	0.008	0.79	2.0	0.04	16.86	0.01	1.528	23.16	4.90	9.3	90.4	0.4	-1.32	1.56	0.75	0.81	0.62	120109	15252	68	196	0	0	0	logfile
✔	8ViB	43256	2024-05-06	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.72	0.0	0.04	5.08	0.00	2.217	11.42	0.00	10.9	88.4	0.7	-0.28	2.87	0.49	0.83	—	4421	888	6	0	7	0	0	logfile
✔	8XoP	38537	2024-05-11	2024-01-02	2.8	3.94	2.89	3.5	0.005	0.69	0.0	0.04	12.47	0.01	2.120	10.63	0.00	2.0	97.9	0.0	1.41	0.85	0.87	2.82	3.5	0.004	0.77	0.0	0.04	16.03	0.00	2.186	13.60	3.47	2.6	97.4	0.0	1.44	0.97	0.86	0.89	2.52	19740	2562	28	0	14	0	0	logfile
✔	8XoW	38542	2024-05-15	2024-01-02	3.32	4.19	3.43	3.9	0.004	0.78	0.0	0.04	18.34	0.01	2.094	18.47	0.98	8.5	91.0	0.5	-0.27	0.70	0.87	1.38	3.9	0.004	0.86	3.0	0.05	18.62	0.01	1.754	19.70	5.81	8.1	91.4	0.5	-0.25	0.27	0.70	0.87	1.36	62334	7962	36	0	0	0	0	logfile
✔	8XoH	38529	2024-05-07	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.002	0.58	0.0	0.04	16.43	0.00	2.181	7.65	2.61	1.6	98.4	0.0	1.13	1.18	0.58	0.81	1.83	8809	1116	5	0	0	0	0	logfile
✔	8Xoi	38530	2024-05-07	2024-01-01	3.2	2.88	2.44	3.1	0.003	0.54	0.0	0.04	15.22	0.00	2.211	4.54	0.32	2.6	97.4	0.0	0.82	0.59	0.80	3.11	3.1	0.004	0.56	0.0	0.04	16.36	0.00	2.193	7.18	2.53	2.8	97.2	0.0	1.35	0.45	0.57	0.81	2.47	8753	1115	5	0	0	0	0	logfile
✔	8XoG	38528	2024-05-07	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	3.2	0.004	0.92	0.0	0.04	16.32	0.00	2.102	7.07	1.92	2.7	97.3	0.1	0.99	0.90	0.52	0.79	2.65	8708	1115	6	0	0	2	0	logfile
✔	8XoJ	38531	2024-05-07	2024-01-01	3.1	3.41	3.14	3.3	0.003	0.56	0.0	0.04	15.11	0.00	2.311	3.72	0.32	2.7	97.3	0.0	1.17	0.66	0.81	3.58	3.3	0.003	0.55	0.0	0.04	16.64	0.00	2.191	6.53	2.95	2.5	97.5	0.0	1.44	1.15	0.65	0.81	2.80	8785	1117	5	0	0	0	0	logfile
✔	8XNG	38503	2024-05-08	2023-12-29	3.56	3.95	3.59	3.8	0.008	0.89	0.0	0.05	14.28	0.01	2.146	17.51	0.00	10.2	89.8	0.0	-1.58	0.60	0.75	1.94	3.8	0.003	0.72	0.0	0.04	16.52	0.00	2.228	12.81	2.09	6.2	93.8	0.0	0.32	1.18	0.59	0.73	1.78	10922	1366	2	0	0	0	0	logfile
✔	8XN4	38497	2024-05-11	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.003	0.71	0.0	0.04	18.13	0.00	2.168	9.93	3.72	2.1	97.9	0.0	1.93	0.95	0.86	0.87	2.68	19173	2506	14	0	0	0	0	logfile
✔	8VGT	43224	2024-05-06	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.30	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.003	0.61	0.0	0.05	14.07	0.00	2.233	4.62	2.56	2.9	97.1	0.0	-0.18	1.15	0.62	0.77	4.52	4714	629	4	0	5	0	0	logfile
✔	8XMN	38483	2024-05-09	2023-12-27	3.37	3.70	3.48	3.6	0.012	1.29	4.0	0.08	17.91	0.01	2.202	20.51	2.34	6.6	93.2	0.2	-1.12	0.57	0.80	1.93	3.6	0.003	0.69	0.0	0.04	17.77	0.00	2.212	13.00	2.34	4.8	95.2	0.0	-0.02	0.55	0.58	0.82	1.45	13110	1569	7	0	18	0	0	logfile
✔	8XMH	38477	2024-05-14	2023-12-27	2.85	3.05	2.86	3.1	0.004	0.53	0.0	0.04	10.95	0.00	2.290	3.16	1.55	2.7	97.3	0.0	-1.68	0.71	0.81	3.33	3.1	0.003	0.56	0.0	0.04	15.51	0.00	2.213	7.52	2.44	3.1	96.9	0.0	1.26	0.68	0.74	0.87	2.70	26948	3444	24	0	16	0	0	logfile
✔	8XMi	38478	2024-05-14	2023-12-27	3.0	3.24	3.00	3.2	0.004	0.60	0.0	0.04	11.90	0.00	2.262	3.82	1.56	3.0	97.0	0.0	-2.19	0.74	0.83	3.59	3.2	0.003	0.57	0.0	0.04	15.61	0.00	2.157	8.37	2.36	2.6	97.4	0.0	0.77	1.05	0.74	0.87	2.75	26718	3415	24	0	16	0	0	logfile
✔	8XMo	38484	2024-05-09	2023-12-27	3.39	3.66	3.42	3.6	0.015	1.57	13.0	0.09	18.70	0.01	2.039	20.52	2.81	4.9	95.0	0.1	-0.94	0.65	0.80	1.74	3.6	0.003	0.63	0.0	0.04	17.49	0.00	2.139	11.77	2.39	3.5	96.5	0.0	0.17	1.22	0.63	0.81	1.75	13323	1578	7	0	22	0	0	logfile
✔	8XLM	38453	2024-05-14	2023-12-26	3.22	3.64	3.18	3.5	0.004	0.60	0.0	0.04	19.13	0.01	2.148	7.31	0.16	9.2	90.5	0.3	-0.71	0.77	0.76	1.66	3.5	0.003	0.59	0.0	0.04	17.61	0.00	2.136	8.73	3.35	8.2	91.6	0.3	-0.96	0.44	0.81	0.86	1.81	28596	3529	18	0	57	0	0	logfile
✔	8XJL	38400	2024-05-07	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.003	0.53	0.0	0.04	14.80	0.00	2.174	6.91	1.05	1.7	98.3	0.0	1.83	0.59	0.68	0.80	3.27	8846	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2024-05-07	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.55	0.0	0.04	14.72	0.00	2.198	7.31	2.43	1.9	98.1	0.0	2.00	1.19	0.68	0.83	4.09	8849	1140	6	0	1	0	0	logfile
✔	8RJL	19251	2024-05-17	2023-12-21	3.34	3.79	3.44	3.8	0.012	1.32	12.0	0.07	16.84	0.01	1.607	10.76	4.59	12.5	86.4	1.1	-5.23	0.66	0.76	1.32	3.8	0.003	0.79	0.0	0.04	17.00	0.00	2.025	4.52	2.34	4.4	95.6	0.0	0.17	0.64	0.62	0.73	0.77	36300	4575	18	0	0	0	0	logfile

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