Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9E6N	47573	2025-05-18	2024-10-30	2.8	3.68	2.85	3.4	0.003	0.50	0.0	0.04	14.95	0.00	1.976	4.64	0.41	1.4	98.6	0.0	0.67	0.74	0.85	3.01	3.4	0.003	0.60	0.0	0.04	15.91	0.00	1.911	4.67	1.11	1.3	98.7	0.0	1.24	0.39	0.72	0.83	2.58	16522	2085	18	18	12	0	0	logfile
✔	9E5G	47526	2025-05-18	2024-10-28	3.07	3.27	3.05	3.3	0.003	0.50	2.0	0.04	15.87	0.00	2.253	5.55	0.42	2.4	97.4	0.2	1.08	0.47	0.66	2.45	3.3	0.002	0.47	0.0	0.04	15.86	0.00	2.603	4.15	2.30	2.9	97.0	0.2	1.18	0.65	0.70	0.86	3.97	9927	1318	17	0	6	69	0	logfile
✔	9K9S	62197	2025-05-17	2024-10-27	2.39	2.23	2.53	1.9	0.005	0.65	0.0	0.05	18.80	0.01	2.130	7.55	2.24	5.2	94.5	0.3	-0.14	0.81	0.82	3.61	1.9	0.003	0.61	0.0	0.04	18.82	0.00	1.413	5.31	3.43	3.9	95.8	0.3	0.34	0.30	0.83	0.85	3.51	14241	1642	7	39	3	0	0	logfile
✔	9K9R	62196	2025-05-17	2024-10-27	2.61	2.28	2.69	2.1	0.005	0.63	0.0	0.04	15.94	0.00	2.117	5.99	0.07	4.3	95.4	0.3	0.14	0.78	0.80	3.96	2.1	0.003	0.61	0.0	0.04	18.03	0.00	1.934	5.10	2.18	4.0	95.7	0.2	0.24	0.34	0.80	0.84	3.29	14230	1642	7	38	3	0	0	logfile
✔	9K9U	62199	2025-05-17	2024-10-27	3.08	2.41	3.14	2.1	0.002	0.56	0.0	0.04	15.65	0.00	2.242	7.77	0.20	4.1	95.8	0.1	0.48	0.75	0.74	2.67	2.1	0.005	0.65	0.0	0.04	17.64	0.00	2.425	7.84	2.07	5.3	94.6	0.1	0.18	0.93	0.76	0.78	2.43	13868	1624	5	30	0	0	0	logfile
✔	9K9L	62193	2025-05-12	2024-10-27	3.66	3.66	3.61	3.7	0.004	0.65	0.0	0.04	28.69	0.01	2.253	10.54	0.80	0.7	99.3	0.0	0.22	0.71	0.75	1.31	3.7	0.005	0.61	0.0	0.03	29.62	0.00	2.572	9.01	2.81	1.9	98.1	0.0	2.89	0.72	0.74	0.79	1.08	9813	599	10	242	0	0	0	logfile
✔	9K9T	62198	2025-05-17	2024-10-27	2.96	2.65	3.09	1.9	0.003	0.68	0.0	0.05	15.46	0.00	2.236	8.51	0.27	4.2	95.7	0.1	-0.22	0.81	0.77	2.52	2.0	0.005	1.06	1.0	0.05	18.26	0.01	1.919	14.51	2.47	4.0	95.8	0.1	-0.06	0.61	0.83	0.81	2.29	14139	1624	5	43	0	0	0	logfile
✔	9K9V	62200	2025-05-17	2024-10-27	3.0	2.39	3.07	2.1	0.003	0.61	0.0	0.04	15.07	0.00	2.212	7.55	0.20	4.7	95.2	0.1	0.33	0.73	0.71	2.53	2.0	0.005	0.76	0.0	0.05	17.65	0.01	2.302	8.90	1.80	4.8	95.1	0.1	-0.27	0.51	0.75	0.75	2.18	13869	1624	5	30	0	0	0	logfile
✔	9H76	51912	2025-05-09	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.003	0.63	0.0	0.04	16.30	0.00	2.489	6.73	2.28	2.2	97.8	0.0	2.11	0.60	0.64	0.87	3.17	4157	547	3	0	0	0	0	logfile
✔	9K7N	62150	2025-05-10	2024-10-24	3.3	3.61	3.28	3.6	0.007	1.23	1.0	0.09	12.28	0.01	2.115	9.25	1.08	1.8	98.2	0.0	2.30	0.48	0.74	1.88	3.6	0.003	0.62	0.0	0.04	15.52	0.00	2.562	8.21	2.80	2.0	98.0	0.0	1.60	0.99	0.53	0.81	0.88	4332	545	2	0	2	0	0	logfile
✔	9K7B	62147	2025-05-10	2024-10-23	2.75	2.95	2.74	3.0	0.013	1.40	0.0	0.10	14.68	0.01	1.784	20.92	1.71	1.1	98.9	0.0	1.92	0.43	0.67	3.19	3.0	0.003	0.61	0.0	0.04	14.49	0.00	2.334	8.81	0.86	2.4	97.6	0.0	1.51	0.93	0.60	0.86	3.12	4522	544	2	0	11	19	0	logfile
✔	9E2V	47469	2025-05-18	2024-10-23	2.0	2.78	2.06	2.5	0.002	0.40	0.0	0.04	17.95	0.00	2.381	3.76	0.85	0.9	99.1	0.0	1.64	0.79	0.94	5.25	2.5	0.003	0.45	0.0	0.04	17.50	0.00	2.622	2.76	1.69	1.3	98.7	0.0	2.46	0.79	0.78	0.94	5.59	16910	2260	10	0	0	0	0	logfile
✔	9H5G	51884	2025-05-09	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.005	0.91	0.0	0.05	16.89	0.00	2.599	2.68	4.23	6.4	93.6	0.0	-2.79	0.65	0.45	0.89	4.11	3300	432	6	0	0	0	0	logfile
✔	9K6L	62129	2025-05-12	2024-10-22	2.77	2.29	2.78	2.1	0.004	0.77	0.0	0.05	16.44	0.01	2.090	16.17	0.31	3.3	96.7	0.0	0.62	0.73	0.75	2.26	2.0	0.004	0.66	0.0	0.04	17.41	0.00	2.448	12.73	4.29	2.5	97.5	0.0	0.57	0.41	0.77	0.78	2.12	8914	1127	6	0	1	0	0	logfile
✔	9H5J	51886	2025-05-09	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.004	0.78	0.0	0.05	17.38	0.01	2.595	4.02	2.91	5.5	94.5	0.0	-3.05	0.83	0.45	0.91	5.20	3300	432	6	0	0	0	0	logfile
✔	9E24	47433	2025-05-19	2024-10-21	3.4	4.22	—	3.9	0.003	0.50	0.0	0.04	13.40	0.00	2.008	6.55	0.06	2.6	97.4	0.0	1.00	0.88	0.74	-0.32	3.8	0.004	0.77	0.0	0.05	15.62	0.00	2.476	12.48	3.66	3.3	96.7	0.0	0.61	1.40	0.92	0.86	1.83	18324	2532	6	0	0	0	0	logfile
✔	9E1T	47420	2025-05-13	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.004	0.65	0.0	0.04	15.81	0.00	2.033	8.85	1.76	4.4	95.6	0.0	0.03	2.75	0.74	0.80	3.18	10032	1204	4	2	2	0	0	logfile
✔	9E27	47442	2025-05-19	2024-10-21	3.2	3.80	—	3.6	0.003	0.53	0.0	0.05	14.22	0.00	1.923	8.53	0.11	4.2	95.8	0.0	1.35	0.89	0.83	2.46	3.6	0.004	0.81	1.0	0.05	15.59	0.00	2.029	8.86	2.48	3.3	96.7	0.0	0.95	0.50	0.92	0.87	2.02	18496	2532	12	0	12	0	0	logfile
✔	9E25	47436	2025-05-19	2024-10-21	3.2	3.94	—	3.7	0.003	0.46	0.0	0.04	13.78	0.00	1.991	5.24	0.06	4.1	95.9	0.0	1.28	0.84	0.70	-0.08	3.7	0.003	0.70	0.0	0.05	15.88	0.00	2.384	11.14	2.36	2.7	97.3	0.0	1.13	1.40	0.91	0.87	1.34	18180	2532	6	0	0	0	0	logfile
✔	9K3A	62011	2025-05-17	2024-10-18	3.6	3.41	3.41	3.6	0.008	1.11	14.0	0.08	16.14	0.01	1.754	14.90	0.40	4.0	96.0	0.0	1.17	0.30	0.81	2.04	3.6	0.005	0.67	0.0	0.04	17.03	0.01	2.474	7.39	2.78	4.2	95.8	0.0	1.36	1.59	0.31	0.83	1.79	16122	2044	2	0	0	0	0	logfile

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