Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EAJ	47833	2025-05-10	2024-11-11	3.2	3.44	3.19	3.4	0.004	0.51	0.0	0.04	12.00	0.00	2.136	7.55	1.78	4.2	95.8	0.0	0.76	0.56	0.81	3.46	3.4	0.003	0.55	0.0	0.04	14.14	0.00	2.577	7.55	2.50	3.0	97.0	0.0	1.25	0.89	0.60	0.82	3.11	5246	662	4	0	0	0	0	logfile
✔	9EAi	47832	2025-05-10	2024-11-11	3.1	3.42	3.09	3.4	0.003	0.51	0.0	0.04	10.65	0.00	2.233	6.30	1.37	2.1	97.9	0.0	0.13	0.58	0.83	3.53	3.4	0.003	0.50	0.0	0.04	13.04	0.00	2.537	5.04	3.25	2.6	97.4	0.0	0.57	0.25	0.54	0.82	2.96	5554	687	5	0	4	0	0	logfile
✔	9EA0	47823	2025-05-27	2024-11-09	2.0	2.14	2.05	2.1	0.004	0.60	0.0	0.05	13.94	0.00	2.253	2.26	0.86	2.0	98.0	0.0	0.36	0.74	0.86	5.76	2.1	0.003	0.69	0.0	0.04	13.00	0.00	1.988	1.95	0.82	3.0	97.0	0.0	0.32	0.35	0.76	0.87	5.96	30002	3555	51	0	144	1214	0	logfile
✔	9E9Z	47822	2025-05-30	2024-11-09	3.95	4.26	3.93	4.2	0.007	1.04	2.0	0.06	12.94	0.01	2.047	8.87	1.16	7.7	92.2	0.0	-1.56	0.51	0.77	1.87	4.2	0.004	0.82	1.0	0.05	16.14	0.00	2.174	14.91	4.10	4.8	95.2	0.0	-0.75	1.34	0.54	0.81	1.53	32832	4272	20	0	8	0	0	logfile
✔	9KH5	62332	2025-05-09	2024-11-09	3.74	4.67	2.98	4.3	0.008	0.98	0.0	0.04	17.15	0.01	2.202	28.14	8.97	13.0	87.0	0.0	-4.34	0.48	0.79	0.82	4.3	0.003	0.89	0.0	0.05	16.46	0.01	2.462	15.54	4.75	7.1	92.9	0.0	-0.05	2.17	0.48	0.81	0.58	3526	455	1	0	0	0	0	logfile
✔	9E9Y	47821	2025-05-30	2024-11-09	3.96	4.31	4.01	4.2	0.006	0.95	1.0	0.05	13.04	0.01	1.878	8.74	0.88	6.5	93.5	0.0	-1.50	0.49	0.75	1.73	4.2	0.005	0.80	0.0	0.05	15.99	0.01	2.153	15.13	4.23	4.7	95.3	0.0	-0.60	0.83	0.53	0.80	1.52	32836	4272	20	0	8	0	0	logfile
✔	9HBB	52014	2025-05-10	2024-11-06	3.0	3.19	2.92	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.56	0.0	0.05	15.54	0.00	2.476	1.41	2.27	3.4	96.6	0.0	-1.67	1.40	0.44	0.85	5.16	7074	456	6	0	0	0	3606	logfile
✔	9KET	62293	2025-05-28	2024-11-05	3.46	3.85	—	3.7	0.003	0.67	0.0	0.04	20.45	0.00	2.075	13.69	0.31	4.6	95.4	0.0	-0.52	0.76	0.76	1.59	3.7	0.004	0.71	0.0	0.04	20.56	0.00	2.104	11.67	3.88	4.4	95.6	0.0	-0.36	0.46	0.78	0.85	1.39	28870	3443	11	106	3	0	0	logfile
✔	9E82	47700	2025-05-11	2024-11-04	3.4	3.55	3.27	3.5	0.003	0.53	1.0	0.04	9.81	0.00	2.068	10.34	3.04	7.2	92.8	0.0	-0.53	0.57	0.63	1.07	3.5	0.004	0.80	0.0	0.05	13.82	0.01	2.326	14.60	5.10	6.0	94.0	0.0	-0.56	1.38	0.58	0.63	1.12	8200	1034	6	0	1	0	0	logfile
✔	9E7W	47693	2025-05-25	2024-11-04	3.7	1.94	2.77	1.5	0.007	0.64	0.0	0.05	14.75	0.01	2.028	6.09	1.25	3.9	96.1	0.0	-0.83	0.45	0.71	5.19	1.6	0.003	0.56	0.0	0.04	15.70	0.00	2.383	6.09	2.04	2.2	97.8	0.0	-0.37	0.35	0.44	0.68	4.43	27857	3523	8	0	0	0	0	logfile
✔	9KDF	62274	2025-05-12	2024-11-03	3.3	2.46	—	2.9	0.007	0.74	0.0	0.04	14.53	0.01	1.213	10.13	0.25	4.1	95.9	0.0	0.94	0.68	0.63	1.43	2.1	0.004	0.71	0.0	0.04	17.31	0.00	1.160	11.48	2.99	4.4	95.6	0.0	1.22	0.55	0.71	0.67	1.15	7399	917	5	0	7	0	0	logfile
✔	9KDG	62275	2025-05-11	2024-11-03	3.33	3.31	3.36	3.5	0.007	0.68	0.0	0.04	14.75	0.01	2.035	5.75	0.00	3.2	96.8	0.0	0.37	0.46	0.71	2.78	3.5	0.003	0.60	0.0	0.04	16.78	0.00	1.968	5.82	2.14	3.8	96.2	0.0	1.32	0.46	0.49	0.75	1.92	7292	907	4	0	7	0	0	logfile
✔	9KC9	62246	2025-05-16	2024-11-01	3.1	3.32	2.95	3.4	0.003	0.59	0.0	0.04	18.10	0.00	2.239	4.25	0.61	3.7	96.3	0.0	0.26	0.64	0.86	1.81	3.4	0.003	0.50	0.0	0.04	18.06	0.00	2.483	2.81	2.75	4.9	95.1	0.0	0.50	0.90	0.64	0.87	2.04	15005	1825	10	0	15	0	0	logfile
✔	9E7J	47678	2025-05-09	2024-11-01	2.98	3.23	2.97	3.3	0.011	0.90	0.0	0.05	14.35	0.00	2.493	11.05	0.00	2.8	97.2	0.0	-0.61	0.60	0.76	3.17	3.3	0.003	0.63	0.0	0.04	16.16	0.00	2.670	8.77	2.53	0.0	100.0	0.0	3.24	0.44	0.57	0.76	3.23	3112	440	4	0	0	0	0	logfile
✔	9KCA	62247	2025-05-16	2024-11-01	3.18	3.39	3.18	3.4	0.005	0.65	0.0	0.04	17.73	0.00	2.238	4.08	0.24	4.8	95.2	0.0	-0.89	0.68	0.89	2.17	3.4	0.004	0.54	0.0	0.04	17.84	0.00	2.483	2.14	2.39	4.8	95.2	0.0	0.18	0.23	0.68	0.89	1.81	15005	1825	10	0	15	0	0	logfile
✔	9E6L	47572	2025-05-18	2024-10-30	3.3	4.20	3.38	3.8	0.002	0.50	0.0	0.04	14.12	0.00	1.753	5.38	0.00	1.3	98.6	0.0	1.86	0.71	0.87	2.77	3.7	0.003	0.55	0.0	0.04	14.66	0.00	1.957	4.02	0.47	1.1	98.9	0.0	1.95	0.32	0.72	0.89	2.57	16587	2094	18	18	18	0	0	logfile
✔	9KAY	62216	2025-05-27	2024-10-30	1.73	1.88	1.85	1.9	0.003	0.63	0.0	0.04	14.13	0.00	2.308	2.60	0.09	1.5	98.5	0.0	5.22	0.76	0.87	8.67	1.9	0.003	0.56	0.0	0.04	14.93	0.00	2.637	2.71	0.30	1.8	98.2	0.0	5.44	0.77	0.77	0.88	8.56	30168	3624	24	0	0	0	0	logfile
✔	9KBD	62222	2025-05-13	2024-10-30	3.7	3.92	3.70	3.9	0.003	0.60	0.0	0.04	15.30	0.00	2.236	7.25	0.17	4.1	95.9	0.0	-1.05	0.73	0.78	1.71	3.9	0.003	0.63	0.0	0.04	16.94	0.00	2.401	10.95	1.52	4.3	95.7	0.0	0.30	0.76	0.71	0.72	1.53	10728	1318	4	0	0	0	0	logfile
✔	9E6H	47565	2025-05-11	2024-10-30	2.84	3.49	2.79	3.2	0.014	0.99	0.0	0.05	19.32	0.00	2.087	3.06	0.00	1.6	98.4	0.0	0.47	0.80	0.77	4.47	3.2	0.004	0.87	0.0	0.05	14.81	0.00	2.079	4.27	0.36	1.9	98.1	0.0	0.73	1.06	0.82	0.85	5.30	8106	978	16	0	52	0	0	logfile
✔	9KBF	62223	2025-05-10	2024-10-30	3.74	3.96	3.77	3.9	0.004	0.64	0.0	0.05	14.54	0.00	2.199	6.95	0.20	7.4	92.6	0.0	-1.16	0.71	0.80	1.76	3.9	0.004	0.63	0.0	0.04	17.13	0.00	2.450	12.35	1.96	5.5	94.5	0.0	-0.03	1.12	0.72	0.81	1.40	4587	569	2	0	0	0	0	logfile

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