Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XMK	38480	2025-05-14	2023-12-27	3.03	3.24	3.07	3.2	0.004	0.53	0.0	0.04	13.98	0.00	2.186	10.49	0.16	3.7	96.3	0.0	-0.74	0.70	0.81	2.70	3.2	0.004	0.60	0.0	0.04	16.09	0.00	2.174	8.86	2.76	5.2	94.8	0.0	-0.79	1.59	0.69	0.82	2.40	11815	1553	6	0	23	0	0	logfile
✔	8VGH	43200	2025-05-21	2023-12-27	2.9	4.11	3.06	3.9	0.011	0.94	0.0	0.05	12.79	0.01	2.239	6.69	0.13	7.1	92.4	0.5	-1.33	0.82	0.82	3.38	3.9	0.004	0.80	0.0	0.05	15.62	0.01	2.399	8.37	3.10	3.8	96.2	0.0	-0.02	0.76	0.82	0.82	2.62	20472	2668	12	0	0	0	0	logfile
✔	8VGN	43212	2025-05-12	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.71	0.0	0.04	15.68	0.00	2.470	5.93	0.59	1.9	98.1	0.0	1.38	3.03	0.70	0.84	3.89	9150	1204	6	0	0	0	0	logfile
✔	8XMG	38476	2025-05-23	2023-12-27	2.9	2.26	2.89	2.0	0.004	0.65	0.0	0.06	12.81	0.01	2.216	6.94	0.11	3.7	96.3	0.0	0.23	0.78	0.79	3.45	2.0	0.003	0.65	0.0	0.05	15.64	0.00	2.247	6.90	2.57	3.3	96.7	0.0	0.41	1.02	0.78	0.81	3.07	24476	3062	6	0	38	0	0	logfile
✔	8XMF	38475	2025-05-10	2023-12-27	3.64	4.12	3.75	4.0	0.015	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.004	0.69	0.0	0.04	16.41	0.00	1.859	9.37	6.04	4.2	95.8	0.0	1.34	1.00	0.60	0.81	1.87	4929	636	4	0	13	0	0	logfile
✔	8VGK	43203	2025-05-20	2023-12-27	2.4	3.44	2.56	3.1	0.005	1.04	0.0	0.06	13.84	0.01	2.099	3.12	0.65	7.0	92.3	0.6	-1.00	0.84	0.81	4.28	3.2	0.004	0.86	0.0	0.05	15.22	0.01	2.429	6.77	1.48	5.7	94.3	0.0	0.21	0.85	0.81	0.86	3.25	20567	2672	20	0	0	135	0	logfile
✔	8XMA	38469	2025-05-10	2023-12-27	2.65	3.10	2.81	3.1	0.015	0.63	0.0	0.04	23.46	0.00	1.957	7.89	0.00	1.4	98.6	0.0	3.44	0.54	0.76	3.01	3.0	0.002	0.47	0.0	0.04	16.76	0.00	1.975	6.58	2.85	1.2	98.8	0.0	3.85	0.58	0.54	0.78	2.54	4858	601	4	0	14	0	0	logfile
✔	8XMi	38478	2025-05-25	2023-12-27	3.0	3.24	3.00	3.2	0.004	0.60	0.0	0.04	11.90	0.00	2.262	3.82	1.56	3.0	97.0	0.0	-2.19	0.74	0.83	3.59	3.2	0.003	0.56	0.0	0.04	15.41	0.00	2.277	7.56	1.94	2.2	97.8	0.0	1.46	1.06	0.74	0.87	2.41	26718	3415	24	0	16	0	0	logfile
✔	8XMH	38477	2025-05-25	2023-12-27	2.85	3.05	2.86	3.1	0.004	0.53	0.0	0.04	10.95	0.00	2.290	3.16	1.55	2.7	97.3	0.0	-1.68	0.71	0.81	3.33	3.1	0.002	0.56	0.0	0.04	15.45	0.00	2.373	7.24	1.72	2.5	97.5	0.0	1.61	0.68	0.74	0.87	2.91	26948	3444	24	0	16	0	0	logfile
✔	8VGT	43224	2025-05-10	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.35	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.004	0.68	0.0	0.05	14.24	0.00	2.557	4.05	2.33	2.9	97.1	0.0	-0.36	1.14	0.63	0.78	4.51	4714	629	4	0	5	0	0	logfile
✔	8XMQ	38486	2025-05-15	2023-12-27	3.21	3.45	3.24	3.4	0.004	0.56	0.0	0.04	13.77	0.00	2.074	9.10	0.15	4.7	95.3	0.1	-0.24	0.67	0.77	2.29	3.4	0.003	0.58	0.0	0.04	16.16	0.00	2.240	7.83	2.80	4.9	95.1	0.1	-0.30	1.32	0.67	0.82	1.97	12950	1657	12	0	25	0	0	logfile
✔	8XM5	38463	2025-05-23	2023-12-27	2.61	2.22	2.59	2.1	0.004	0.67	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.005	0.83	1.0	0.05	16.03	0.00	2.165	8.89	2.51	4.3	95.7	0.0	0.22	1.28	0.79	0.80	3.18	24226	3047	6	0	27	0	0	logfile
✔	8XML	38481	2025-05-11	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.69	0.0	0.04	14.96	0.00	2.519	7.53	2.04	2.9	97.1	0.0	0.19	0.70	0.72	0.85	3.71	8245	1071	5	0	0	0	0	logfile
✔	8XLV	38460	2025-05-23	2023-12-26	3.07	2.39	3.08	3.2	0.004	0.72	1.0	0.05	13.41	0.01	2.202	11.82	0.15	7.8	91.9	0.3	-1.74	0.66	0.70	2.55	2.1	0.004	0.69	0.0	0.05	15.51	0.00	2.277	9.14	2.90	7.8	92.1	0.1	-1.29	1.10	0.73	0.76	2.39	24219	3025	12	0	36	0	0	logfile
✔	8XLJ	38450	2025-05-27	2023-12-26	3.9	4.10	3.88	4.1	0.004	0.87	1.0	0.05	15.34	0.02	2.043	12.27	1.44	4.7	94.7	0.6	-0.10	0.74	0.82	2.38	4.1	0.004	0.69	0.0	0.04	16.20	0.00	2.504	8.41	2.07	2.9	97.1	0.0	0.61	1.21	0.76	0.85	1.95	29556	3720	10	0	0	0	0	logfile
✔	8XLR	38456	2025-05-15	2023-12-26	2.93	3.11	2.94	3.1	0.005	0.72	2.0	0.05	17.01	0.01	2.293	1.57	0.59	2.4	97.6	0.0	0.05	0.69	0.83	2.02	3.1	0.002	0.52	0.0	0.04	16.75	0.00	2.304	1.86	2.60	1.5	98.5	0.0	0.97	0.27	0.71	0.83	1.84	13338	1514	4	0	66	0	0	logfile
✔	8XLM	38453	2025-05-26	2023-12-26	3.22	3.64	3.18	3.5	0.004	0.62	0.0	0.04	19.13	0.01	2.148	7.31	0.16	9.2	90.5	0.3	-0.71	0.77	0.76	1.66	3.4	0.005	0.65	0.0	0.05	17.50	0.00	2.354	6.33	3.09	9.1	90.7	0.2	-0.92	1.10	0.81	0.86	1.75	28596	3529	18	0	57	0	0	logfile
✔	8XLN	38454	2025-05-13	2023-12-26	3.78	3.92	3.73	3.8	0.004	0.66	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.003	0.63	0.0	0.04	16.52	0.00	2.517	5.44	2.02	6.5	93.5	0.0	0.32	0.37	0.79	0.83	1.40	6593	789	8	0	15	0	0	logfile
✔	8XL9	38442	2025-05-21	2023-12-25	2.61	2.72	2.63	2.8	0.006	0.87	0.0	0.06	14.71	0.01	2.283	6.70	0.53	4.8	94.7	0.4	-3.36	0.72	0.77	3.04	2.8	0.004	0.66	0.0	0.05	16.42	0.00	2.578	7.08	2.04	4.4	95.5	0.1	-0.03	1.21	0.74	0.80	3.12	21044	2732	8	0	4	0	0	logfile
✔	8XKY	38431	2025-05-16	2023-12-25	3.42	4.51	3.39	3.8	0.006	0.85	0.0	0.06	15.24	0.01	2.386	5.89	0.24	3.8	96.2	0.0	1.37	0.60	0.78	1.91	3.8	0.003	0.75	2.0	0.06	15.76	0.00	2.274	6.02	2.29	1.8	98.2	0.0	1.39	0.97	0.61	0.80	1.69	14928	968	10	0	0	0	7332	logfile

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