Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XL9	38442	2025-05-21	2023-12-25	2.61	2.72	2.63	2.8	0.006	0.87	0.0	0.06	14.71	0.01	2.283	6.70	0.53	4.8	94.7	0.4	-3.36	0.72	0.77	3.04	2.8	0.004	0.66	0.0	0.05	16.42	0.00	2.578	7.08	2.04	4.4	95.5	0.1	-0.03	1.21	0.74	0.80	3.12	21044	2732	8	0	4	0	0	logfile
✔	8XKX	38430	2025-05-16	2023-12-25	3.7	3.94	3.41	3.9	0.004	0.74	0.0	0.06	16.10	0.00	2.288	4.48	0.24	1.9	98.1	0.0	1.46	0.64	0.77	2.91	4.0	0.003	0.62	0.0	0.06	16.90	0.00	2.304	4.42	3.78	3.0	97.0	0.0	1.26	4.47	0.64	0.78	2.83	14858	958	10	0	0	0	7340	logfile
✔	8XKY	38431	2025-05-16	2023-12-25	3.42	4.51	3.39	3.8	0.006	0.85	0.0	0.06	15.24	0.01	2.386	5.89	0.24	3.8	96.2	0.0	1.37	0.60	0.78	1.91	3.8	0.003	0.75	2.0	0.06	15.76	0.00	2.274	6.02	2.29	1.8	98.2	0.0	1.39	0.97	0.61	0.80	1.69	14928	968	10	0	0	0	7332	logfile
✔	8XKR	38423	2025-05-16	2023-12-24	3.53	4.31	3.64	3.5	0.004	0.70	0.0	0.04	17.12	0.00	2.205	23.70	0.82	10.3	89.6	0.1	-1.86	0.83	0.77	0.99	3.5	0.003	0.66	0.0	0.04	17.29	0.00	2.502	12.79	2.46	7.8	92.1	0.1	-1.79	0.50	0.84	0.77	0.87	14118	1762	6	0	0	0	0	logfile
✔	8RK4	19259	2025-05-11	2023-12-23	4.74	6.78	6.16	3.7	0.011	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	8XKi	38418	2025-05-23	2023-12-23	3.2	3.40	3.22	3.4	0.004	0.60	0.0	0.05	19.04	0.00	2.156	6.18	0.30	5.8	94.1	0.1	-2.04	0.75	0.82	2.39	3.3	0.002	0.63	1.0	0.04	16.96	0.00	2.429	4.07	3.20	5.3	94.6	0.1	-1.34	1.02	0.78	0.88	2.11	24431	3121	13	0	32	0	0	logfile
✔	8RK8	19264	2025-05-13	2023-12-23	3.88	3.77	3.92	4.0	0.037	0.55	0.0	0.05	14.93	0.01	0.528	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.043	1.21	1.0	0.05	17.10	0.01	0.777	20.97	4.62	4.9	95.1	0.0	-0.23	1.24	0.78	0.83	1.39	11226	1512	6	0	0	0	0	logfile
✔	8RK9	19265	2025-05-10	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	20.0	0.004	0.87	0.0	0.05	17.19	0.01	2.529	18.85	2.88	11.9	88.1	0.0	-3.53	4.07	0.28	0.11	-0.96	6138	816	6	0	0	0	0	logfile
✔	8VG1	43197	2025-05-16	2023-12-22	2.48	3.12	2.46	2.9	0.005	0.68	0.0	0.04	26.21	0.00	2.351	0.69	0.51	1.3	98.6	0.1	2.20	0.82	0.85	3.37	2.9	0.006	0.61	0.0	0.04	27.88	0.00	2.465	4.68	1.66	1.8	98.1	0.1	2.35	0.33	0.82	0.85	3.01	14434	930	13	342	1	0	0	logfile
✔	8VFV	43190	2025-05-21	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.23	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.005	0.89	3.0	0.06	14.12	0.01	1.980	8.23	2.53	3.7	96.2	0.1	0.19	0.50	0.71	0.86	3.48	21240	2607	29	0	72	0	0	logfile
✔	8RK0	19254	2025-05-10	2023-12-22	3.38	4.52	3.56	4.1	0.005	0.94	0.0	0.06	23.31	0.01	2.111	16.47	0.14	12.9	87.1	0.0	-2.41	0.73	0.81	1.31	4.1	0.004	0.87	0.0	0.05	14.31	0.01	2.258	13.56	5.38	11.9	87.9	0.1	-2.35	0.39	0.73	0.82	1.26	6940	812	24	0	46	0	0	logfile
✔	8VFY	43194	2025-05-16	2023-12-22	2.89	3.58	2.87	3.2	0.005	0.68	0.0	0.04	26.42	0.00	2.203	1.42	0.27	1.7	98.1	0.1	2.05	0.88	0.85	2.26	3.2	0.004	0.65	0.0	0.03	27.89	0.00	2.414	7.72	1.35	2.1	97.8	0.1	2.44	1.41	0.88	0.85	1.76	14046	881	11	342	0	0	0	logfile
✔	8XK4	38415	2025-05-13	2023-12-22	2.94	3.11	2.94	3.1	0.004	0.63	0.0	0.05	15.22	0.00	1.749	7.92	0.00	3.7	96.0	0.3	-1.05	0.62	0.75	2.72	3.1	0.005	0.69	0.0	0.05	18.27	0.00	1.954	7.66	1.82	4.8	95.2	0.0	-0.77	1.06	0.71	0.82	2.86	6048	689	8	22	3	2	0	logfile
✔	8VG0	43196	2025-05-15	2023-12-22	3.07	3.70	3.13	3.5	0.005	0.71	0.0	0.04	27.18	0.00	2.082	1.11	0.00	0.9	99.1	0.0	2.77	0.80	0.82	2.89	3.5	0.004	0.58	0.0	0.03	27.89	0.00	2.554	5.78	1.46	1.5	98.5	0.0	3.10	0.28	0.79	0.81	2.61	13042	823	12	318	1	0	0	logfile
✔	8XK0	38412	2025-05-13	2023-12-22	2.96	3.16	2.96	3.1	0.003	0.60	0.0	0.05	16.44	0.00	2.023	5.87	0.16	6.3	93.4	0.3	-0.69	0.72	0.81	3.31	3.2	0.004	0.62	0.0	0.04	18.34	0.00	2.083	6.20	1.48	5.8	93.7	0.4	-0.60	0.93	0.75	0.86	2.66	6302	692	6	32	2	22	0	logfile
✔	8XK3	38414	2025-05-13	2023-12-22	2.76	2.99	5.50	3.0	0.004	0.57	0.0	0.05	16.63	0.00	1.758	4.98	0.00	4.2	95.5	0.3	-0.17	0.73	0.80	3.25	3.0	0.004	0.62	0.0	0.04	19.05	0.00	2.001	5.87	2.63	4.5	95.5	0.0	0.21	0.98	0.74	0.86	3.37	6309	692	10	32	3	29	0	logfile
✔	8XJX	38409	2025-05-13	2023-12-22	2.78	2.97	2.78	3.0	0.003	0.60	0.0	0.04	16.49	0.00	1.742	7.01	0.16	4.5	95.2	0.3	-0.23	0.63	0.73	2.21	3.0	0.003	0.57	0.0	0.04	19.25	0.00	2.039	7.01	3.12	6.0	93.9	0.1	-0.11	1.32	0.71	0.79	1.85	6311	693	6	32	1	27	0	logfile
✔	8XJS	38404	2025-05-14	2023-12-22	3.24	3.95	3.26	3.5	0.005	0.71	0.0	0.05	15.75	0.00	2.216	13.52	1.29	5.2	94.6	0.1	-0.54	0.78	0.76	2.35	3.5	0.003	0.59	0.0	0.04	15.78	0.00	2.525	6.99	1.61	4.3	95.6	0.1	-0.14	0.54	0.81	0.85	2.32	11178	1385	5	0	0	0	0	logfile
✔	8VFX	43193	2025-05-17	2023-12-22	2.65	3.26	2.72	3.1	0.005	0.64	0.0	0.04	24.47	0.00	2.067	1.29	0.39	1.8	98.2	0.0	2.04	0.80	0.83	4.19	3.1	0.005	0.60	0.0	0.04	26.62	0.00	2.550	5.21	1.25	2.0	98.0	0.0	2.21	0.45	0.84	0.87	3.43	16124	1222	12	316	0	0	0	logfile
✔	8XK1	38413	2025-05-16	2023-12-22	3.31	4.11	3.34	3.6	0.003	0.64	0.0	0.04	15.79	0.00	2.220	12.54	0.68	6.0	93.9	0.2	-0.97	0.86	0.81	1.83	3.6	0.004	0.71	0.0	0.04	16.28	0.00	2.508	11.37	3.36	6.5	93.5	0.0	-0.98	0.37	0.86	0.83	1.87	14312	1777	6	0	0	0	0	logfile

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