Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VG2	43198	2025-05-17	2023-12-22	3.04	3.43	3.00	3.2	0.004	0.63	0.0	0.04	25.72	0.00	2.219	0.78	0.25	1.7	98.2	0.1	2.46	0.86	0.89	3.91	3.2	0.004	0.56	0.0	0.03	27.19	0.00	2.294	3.59	0.99	2.8	97.1	0.1	2.84	0.26	0.87	0.90	3.38	15689	965	12	392	0	0	0	logfile
✔	8VFX	43193	2025-05-17	2023-12-22	2.65	3.26	2.72	3.1	0.005	0.64	0.0	0.04	24.47	0.00	2.067	1.29	0.39	1.8	98.2	0.0	2.04	0.80	0.83	4.19	3.1	0.005	0.60	0.0	0.04	26.62	0.00	2.550	5.21	1.25	2.0	98.0	0.0	2.21	0.45	0.84	0.87	3.43	16124	1222	12	316	0	0	0	logfile
✔	8XJN	38402	2025-05-12	2023-12-21	3.06	3.28	3.09	3.2	0.004	0.43	0.0	0.04	10.30	0.00	2.207	4.41	0.85	1.6	98.4	0.0	0.92	0.66	0.82	3.85	3.2	0.003	0.54	0.0	0.04	14.29	0.00	2.431	5.54	1.80	1.7	98.3	0.0	1.90	0.60	0.68	0.83	2.83	8948	1164	6	0	1	0	0	logfile
✔	8VFM	43188	2025-05-26	2023-12-21	3.6	2.54	3.57	3.2	0.009	1.05	0.0	0.06	11.04	0.01	2.015	6.46	0.00	5.1	94.9	0.0	-4.47	0.64	0.73	2.02	2.8	0.004	0.89	1.0	0.05	16.16	0.00	1.825	15.68	3.88	4.8	95.2	0.0	-0.51	1.33	0.65	0.73	1.65	28316	3616	20	0	16	0	0	logfile
✔	8XJL	38400	2025-05-12	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.002	0.52	0.0	0.04	14.54	0.00	2.487	5.37	1.48	1.8	98.2	0.0	2.13	0.58	0.66	0.79	3.09	8846	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2025-05-12	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.002	0.52	0.0	0.04	14.66	0.00	2.487	5.20	2.43	1.6	98.4	0.0	2.27	0.52	0.68	0.83	3.83	8849	1140	6	0	1	0	0	logfile
✔	8XJK	38399	2025-05-12	2023-12-21	2.63	2.89	2.68	2.9	0.004	0.43	0.0	0.04	9.76	0.00	2.232	4.34	0.84	1.3	98.7	0.0	1.56	0.70	0.85	4.80	2.9	0.007	0.64	0.0	0.05	15.08	0.00	2.478	4.62	2.32	2.3	97.7	0.0	1.94	1.20	0.69	0.85	4.46	8850	1140	6	0	1	0	0	logfile
✔	8RJJ	19243	2025-05-12	2023-12-21	3.55	4.74	3.70	4.2	0.005	0.92	0.0	0.06	22.55	0.00	2.086	18.05	0.24	12.0	88.0	0.0	-1.62	0.74	0.81	1.22	4.2	0.004	0.83	0.0	0.05	14.43	0.00	2.294	13.67	3.49	11.9	88.1	0.0	-1.22	0.90	0.74	0.81	1.38	8672	1078	24	0	46	0	0	logfile
✔	8VES	43173	2025-05-16	2023-12-20	3.22	3.49	3.35	3.5	0.003	0.38	0.0	0.03	13.07	0.00	2.158	4.47	0.00	1.4	98.6	0.0	2.34	0.76	0.85	1.92	3.4	0.003	0.49	0.0	0.03	16.30	0.00	2.540	5.31	1.21	1.4	98.6	0.0	3.26	1.60	0.75	0.84	1.36	14303	1714	9	19	0	2	0	logfile
✔	8XJ8	38396	2025-05-17	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.004	0.67	0.0	0.04	17.73	0.00	2.095	5.14	1.66	4.0	95.5	0.4	0.16	2.11	0.75	0.87	2.95	15904	1957	10	6	6	0	0	logfile
✔	8XJ7	38395	2025-05-20	2023-12-20	2.74	3.10	2.92	3.1	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.003	0.58	0.0	0.04	16.72	0.00	2.047	5.91	1.97	5.0	94.7	0.3	-0.11	0.33	0.73	0.84	2.90	19595	2420	13	6	9	0	0	logfile
✔	8XiU	38390	2025-05-09	2023-12-20	4.0	4.13	4.18	4.1	0.002	0.55	0.0	0.04	10.64	0.00	2.357	6.37	1.08	1.5	98.5	0.0	2.65	0.48	0.70	—	4.1	0.003	0.78	0.0	0.04	15.51	0.01	2.542	11.43	5.38	1.8	98.2	0.0	1.50	0.50	0.50	0.71	—	2615	348	1	0	0	0	0	logfile
✔	8XJ4	38393	2025-05-10	2023-12-20	3.19	3.42	3.47	3.7	0.005	0.82	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.72	0.0	0.04	17.83	0.01	2.418	4.08	1.26	3.2	96.8	0.0	1.71	1.18	0.70	0.79	2.63	5820	693	6	0	12	0	0	logfile
✔	8XJ6	38394	2025-05-22	2023-12-20	3.32	3.84	3.60	3.7	0.008	0.77	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.002	0.62	0.0	0.04	15.01	0.00	2.414	8.80	1.39	3.3	96.3	0.4	0.21	1.22	0.76	0.80	1.35	22688	2807	12	0	8	0	0	logfile
✔	8XiH	38373	2025-05-14	2023-12-19	3.2	3.16	3.21	3.2	0.004	0.66	0.0	0.05	20.10	0.01	2.044	7.28	0.93	9.0	91.0	0.0	-1.04	0.79	0.85	2.16	3.2	0.007	0.69	0.0	0.05	20.09	0.00	1.950	7.51	3.40	10.5	89.5	0.0	-0.83	0.33	0.80	0.86	2.15	11418	1314	7	31	2	0	0	logfile
✔	8Xi4	38370	2025-05-30	2023-12-19	3.4	3.47	3.33	3.5	0.007	0.85	0.0	0.05	17.18	0.01	1.341	6.56	0.19	6.6	93.4	0.0	-2.42	0.49	0.83	2.39	3.4	0.005	0.69	0.0	0.05	17.64	0.01	2.228	5.27	6.02	8.4	91.6	0.0	-1.63	0.42	0.50	0.87	2.40	33772	4364	20	0	8	0	0	logfile
✔	8Xi5	38371	2025-05-30	2023-12-19	3.4	3.51	3.31	3.5	0.005	0.85	0.0	0.05	17.34	0.01	2.007	6.48	0.24	7.9	92.1	0.0	-2.77	0.52	0.85	2.26	3.5	0.004	0.64	0.0	0.05	17.68	0.00	2.207	6.12	6.25	7.9	92.1	0.0	-1.56	0.35	0.52	0.87	2.25	33820	4376	28	0	8	0	0	logfile
✔	8RiZ	19192	2025-05-14	2023-12-19	3.6	3.74	3.37	3.6	0.008	0.60	0.0	0.04	15.38	0.00	2.010	7.70	0.15	2.5	97.5	0.0	0.43	0.60	0.75	2.52	3.6	0.003	0.61	0.0	0.04	15.49	0.00	2.004	6.67	2.70	3.1	96.9	0.0	0.87	0.72	0.61	0.82	2.41	11862	1482	10	1	6	0	0	logfile
✔	8Xi3	38369	2025-05-17	2023-12-19	3.0	2.80	3.02	3.0	0.004	0.71	4.0	0.05	15.95	0.00	2.072	8.09	0.35	6.8	93.2	0.0	0.53	0.59	0.80	1.94	3.0	0.003	0.59	0.0	0.04	17.28	0.00	2.506	6.08	2.13	6.0	94.0	0.1	0.48	0.44	0.67	0.86	1.66	15162	1911	5	0	0	0	0	logfile
✔	8RiA	19185	2025-05-12	2023-12-18	4.4	4.78	4.45	4.6	0.006	1.99	44.0	0.12	13.30	0.01	1.922	29.52	0.21	10.3	89.1	0.6	-1.40	0.66	0.77	—	4.6	0.003	0.82	0.0	0.05	13.36	0.01	2.408	15.07	0.00	7.6	92.1	0.4	-0.20	1.28	0.65	0.75	—	8786	1142	2	0	0	0	0	logfile

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