Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Woi	37690	2025-05-12	2023-10-07	3.4	3.58	3.34	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.002	0.65	0.0	0.04	13.82	0.00	2.460	4.33	1.02	7.2	92.8	0.0	-2.90	0.62	0.68	0.85	2.81	9324	1217	1	0	0	0	0	logfile
✔	8WoG	37686	2025-05-11	2023-10-07	2.97	3.33	3.06	3.3	0.004	0.50	0.0	0.04	16.62	0.00	1.844	15.62	2.96	3.7	96.3	0.0	0.49	0.62	0.87	2.87	3.3	0.003	0.46	0.0	0.04	16.89	0.00	2.353	14.80	4.19	4.5	95.5	0.0	1.40	0.26	0.61	0.87	2.57	7384	929	5	0	1	1	2	logfile
✔	8WoQ	37695	2025-05-14	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.83	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.005	0.79	0.0	0.05	14.92	0.00	1.944	6.56	2.07	5.0	95.0	0.0	1.18	0.89	0.65	0.84	3.12	11218	1294	10	0	35	4	0	logfile
✔	8WoT	37698	2025-05-13	2023-10-07	3.18	3.73	3.20	3.7	0.003	0.55	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.009	0.77	0.0	0.05	16.55	0.00	2.305	8.45	2.83	5.4	94.4	0.2	0.41	0.89	0.67	0.84	2.23	10672	1272	8	0	22	0	0	logfile
✔	8WoN	37693	2025-05-20	2023-10-07	2.69	2.85	2.71	2.9	0.007	0.79	0.0	0.06	16.53	0.01	2.212	7.48	0.44	5.7	94.3	0.0	-0.08	0.71	0.81	3.36	2.9	0.003	0.60	0.0	0.05	17.37	0.01	2.339	5.26	1.88	5.0	95.0	0.0	0.54	0.58	0.69	0.84	2.72	20720	2650	10	0	0	0	0	logfile
✔	8QRH	18614	2025-05-15	2023-10-07	3.6	3.69	3.46	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.75	0.0	0.04	14.82	0.00	2.488	7.01	1.57	4.1	95.9	0.0	-0.01	0.73	0.59	0.82	2.40	12951	1689	9	0	3	0	0	logfile
✔	8Woo	37694	2025-05-13	2023-10-07	3.9	4.05	3.88	4.0	0.007	1.14	7.0	0.08	13.30	0.01	2.237	6.21	0.00	7.3	92.7	0.0	-6.18	0.64	0.81	2.72	4.0	0.003	0.72	0.0	0.04	15.26	0.00	2.050	6.42	2.14	6.7	93.3	0.0	-2.46	0.82	0.65	0.81	1.35	9412	1217	2	0	5	0	0	logfile
✔	8WNY	37675	2025-05-11	2023-10-06	3.5	3.74	3.44	3.8	0.003	0.78	0.0	0.06	15.85	0.00	2.225	7.57	0.39	2.8	97.2	0.0	1.28	0.63	0.78	1.63	3.7	0.003	0.60	0.0	0.04	16.37	0.00	2.530	5.51	2.71	3.6	96.4	0.0	1.88	0.36	0.65	0.78	1.35	7233	924	4	0	5	0	0	logfile
✔	8QR0	18610	2025-05-14	2023-10-06	2.5	2.61	2.53	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.003	0.61	0.0	0.04	15.37	0.00	2.544	6.37	1.67	0.9	99.1	0.0	3.67	0.34	0.71	0.90	3.56	11598	1360	15	0	41	145	0	logfile
✔	8WNU	37673	2025-05-16	2023-10-06	3.8	4.07	3.83	4.1	0.003	0.58	0.0	0.04	15.01	0.00	1.960	9.85	0.13	8.0	91.8	0.2	-1.09	0.69	0.63	0.95	4.1	0.003	0.78	0.0	0.04	16.91	0.00	2.379	9.45	2.63	8.1	91.7	0.2	-1.28	0.81	0.71	0.71	0.86	14152	1824	10	0	2	0	0	logfile
✔	8UH3	42245	2025-05-12	2023-10-06	3.31	3.52	3.30	3.5	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.005	0.93	0.0	0.05	15.79	0.00	2.408	10.67	2.75	3.2	96.7	0.1	0.22	2.19	0.69	0.83	2.41	8759	1098	7	0	5	1	0	logfile
✔	8WNS	37671	2025-05-11	2023-10-06	3.42	3.80	3.52	3.7	0.003	0.65	0.0	0.04	16.66	0.00	2.207	10.68	0.39	4.0	96.0	0.0	1.29	0.64	0.77	1.75	3.7	0.004	0.70	0.0	0.04	17.02	0.00	2.578	9.85	3.35	4.2	95.8	0.0	1.44	0.37	0.64	0.79	1.53	7226	924	3	0	4	0	0	logfile
✔	8QQU	18605	2025-05-13	2023-10-06	2.9	3.10	2.96	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.59	0.0	0.04	17.91	0.00	2.320	5.05	1.77	2.8	97.2	0.0	1.22	1.09	0.66	0.88	3.29	10715	1273	4	32	0	0	0	logfile
✔	8QQZ	18609	2025-05-14	2023-10-06	2.63	2.79	2.65	2.8	0.013	1.53	0.0	0.08	15.82	0.02	2.182	4.98	2.34	0.8	99.2	0.0	-1.99	0.72	0.90	4.69	2.8	0.004	0.69	0.0	0.04	16.28	0.00	2.543	6.04	0.37	1.0	99.0	0.0	2.79	0.33	0.75	0.90	3.20	11871	1360	15	0	56	195	0	logfile
✔	8UGY	42241	2025-05-10	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.54	0.0	0.04	14.84	0.00	2.415	6.78	2.16	3.1	96.8	0.1	0.85	1.11	0.64	0.82	1.64	6970	864	5	0	6	1	0	logfile
✔	8Wo7	37681	2025-05-11	2023-10-06	2.9	3.17	2.86	3.2	0.007	0.70	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.004	0.63	0.0	0.04	15.13	0.00	2.569	7.02	1.63	3.3	96.6	0.2	1.87	0.36	0.62	0.87	2.22	8118	1080	4	0	4	0	0	logfile
✔	8WNP	37670	2025-05-16	2023-10-06	3.1	3.37	3.16	3.4	0.024	1.04	0.0	0.04	14.69	0.01	1.951	6.73	0.38	7.1	92.8	0.1	-1.41	0.58	0.65	1.74	3.4	0.006	0.82	0.0	0.05	16.22	0.01	2.410	9.10	4.23	8.4	91.5	0.1	-1.49	0.81	0.60	0.69	1.66	14142	1822	10	0	2	0	0	logfile
✔	8WNT	37672	2025-05-11	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.67	0.0	0.04	16.80	0.00	2.552	7.76	3.71	5.8	94.2	0.0	1.11	1.17	0.59	0.77	1.02	7309	933	5	0	5	0	0	logfile
✔	8WNW	37674	2025-05-09	2023-10-06	3.5	3.04	3.38	3.4	0.025	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.022	0.63	0.0	0.04	15.58	0.00	2.402	8.79	4.62	1.8	98.2	0.0	2.28	1.30	0.49	0.76	3.05	1400	173	2	0	3	1	0	logfile
✔	8UG6	42215	2025-05-10	2023-10-05	3.06	2.81	3.01	3.0	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.44	0.65	1.56	3.0	0.003	0.61	0.0	0.04	17.30	0.00	2.542	8.17	1.64	0.7	99.3	0.0	3.33	2.89	0.54	0.81	2.04	6242	786	2	0	0	0	0	logfile

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