Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UG6	42215	2025-05-10	2023-10-05	3.06	2.81	3.01	3.0	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.44	0.65	1.56	3.0	0.003	0.61	0.0	0.04	17.30	0.00	2.542	8.17	1.64	0.7	99.3	0.0	3.33	2.89	0.54	0.81	2.04	6242	786	2	0	0	0	0	logfile
✔	8UGE	42222	2025-05-30	2023-10-05	3.5	3.83	3.12	3.7	0.010	0.87	0.0	0.04	19.62	0.01	1.270	14.80	1.15	6.0	93.8	0.2	0.11	0.75	0.86	1.87	3.6	0.007	0.73	0.0	0.04	18.85	0.00	2.353	10.73	3.29	5.4	94.4	0.2	0.93	0.52	0.75	0.88	2.17	33534	4113	33	0	32	0	0	logfile
✔	8UG4	42213	2025-05-11	2023-10-05	3.02	2.74	2.94	3.0	0.006	0.73	0.0	0.06	14.72	0.02	2.207	9.47	0.00	2.4	97.6	0.0	1.83	0.60	0.86	3.18	3.0	0.002	0.45	0.0	0.04	15.40	0.00	2.630	6.25	0.59	1.9	98.1	0.0	3.01	0.92	0.61	0.88	2.96	7802	972	2	0	0	0	0	logfile
✔	8UG5	42214	2025-05-10	2023-10-05	2.91	2.34	2.88	2.9	0.008	1.13	0.0	0.08	13.47	0.02	2.335	8.71	0.00	4.8	95.2	0.0	0.42	0.53	0.82	2.97	2.9	0.003	0.53	0.0	0.04	16.12	0.00	2.574	7.27	3.79	2.2	97.8	0.0	2.78	1.39	0.53	0.84	3.12	6160	764	2	0	0	0	0	logfile
✔	8UG9	42218	2025-05-26	2023-10-05	3.49	4.07	3.50	3.9	0.003	0.66	0.0	0.05	16.41	0.00	2.182	5.61	0.23	3.8	96.1	0.1	-0.23	0.85	0.84	2.57	3.9	0.003	0.60	0.0	0.04	15.54	0.00	2.463	3.93	2.61	4.2	95.7	0.0	-0.05	0.36	0.86	0.86	2.40	28383	3531	21	0	57	0	0	logfile
✔	8UGD	42221	2025-05-30	2023-10-05	3.5	3.90	3.16	3.7	0.010	1.00	0.0	0.04	19.75	0.01	0.907	16.02	0.92	5.6	94.2	0.2	0.28	0.73	0.84	1.62	3.7	0.005	0.72	0.0	0.04	18.83	0.00	2.289	10.37	3.11	4.9	94.9	0.1	1.04	1.25	0.73	0.86	1.71	33543	4113	33	0	32	0	0	logfile
✔	8UGF	42223	2025-05-30	2023-10-05	3.6	4.00	3.19	3.8	0.010	1.08	0.0	0.04	19.95	0.01	1.469	17.78	1.18	6.6	93.1	0.3	-0.28	0.73	0.84	1.53	3.8	0.006	0.73	0.0	0.04	19.16	0.00	2.316	11.80	4.38	5.5	94.2	0.3	0.51	0.53	0.73	0.86	1.73	33551	4113	34	0	32	0	0	logfile
✔	8WMQ	37658	2025-05-18	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.002	0.99	0.0	0.04	14.74	0.00	2.227	3.29	1.63	4.9	95.1	0.0	1.84	1.30	0.62	0.82	0.73	16348	1080	6	0	6	0	8208	logfile
✔	8QQi	18592	2025-05-17	2023-10-04	2.9	3.20	2.97	3.2	0.003	0.60	0.0	0.04	14.26	0.01	2.370	1.17	0.13	4.6	95.4	0.0	-2.86	0.78	0.85	3.64	3.2	0.002	0.52	0.0	0.04	17.65	0.00	2.141	2.53	1.55	3.9	96.1	0.0	0.06	0.63	0.75	0.85	2.82	15652	1832	10	52	4	0	0	logfile
✔	8UFC	42192	2025-05-30	2023-10-04	3.09	3.36	3.20	3.4	0.003	0.66	0.0	0.05	9.95	0.01	2.186	1.79	0.00	2.3	97.7	0.0	0.74	0.61	0.73	3.76	3.4	0.008	0.71	0.0	0.05	13.60	0.01	2.168	5.19	2.13	3.6	96.4	0.0	-0.02	0.55	0.57	0.81	3.47	33624	4336	28	0	16	0	0	logfile
✔	8WMM	37656	2025-05-26	2023-10-04	2.98	2.33	2.99	2.9	0.003	0.56	0.0	0.04	17.96	0.00	2.219	5.71	0.52	5.0	95.0	0.0	0.00	0.69	0.71	2.12	2.0	0.004	0.75	1.0	0.04	19.26	0.00	2.241	9.09	1.24	3.9	96.0	0.1	0.07	1.28	0.74	0.74	1.96	28632	2692	12	294	2	0	0	logfile
✔	8UFA	42188	2025-05-28	2023-10-04	2.86	3.10	2.95	3.1	0.004	0.69	0.0	0.05	9.39	0.01	2.262	1.20	0.00	1.9	98.0	0.0	0.89	0.62	0.74	4.33	3.1	0.003	0.58	0.0	0.05	14.09	0.00	2.464	5.35	1.93	2.6	97.4	0.0	0.51	1.21	0.62	0.82	3.61	31260	4024	20	0	8	0	0	logfile
✔	8UFE	42205	2025-05-09	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.67	0.0	0.04	18.34	0.00	2.473	11.71	4.71	4.7	95.1	0.2	1.80	0.37	0.54	0.74	-0.41	3449	470	2	0	1	0	0	logfile
✔	8WMN	37657	2025-05-26	2023-10-04	2.82	2.30	2.85	1.7	0.003	0.66	1.0	0.04	18.45	0.00	2.068	10.08	0.84	5.0	95.0	0.0	-0.57	0.64	0.63	1.36	1.8	0.006	0.73	0.0	0.04	19.26	0.01	1.889	11.76	1.29	5.9	94.1	0.0	-0.43	0.60	0.70	0.69	1.45	28878	2692	10	306	2	0	0	logfile
✔	8WM5	37641	2025-05-11	2023-10-03	3.04	3.42	3.12	3.3	0.007	0.77	0.0	0.04	18.60	0.01	1.284	12.25	0.00	4.3	95.6	0.1	1.57	0.66	0.85	2.35	3.4	0.003	0.55	0.0	0.04	16.73	0.00	2.376	9.74	2.39	1.8	98.2	0.0	2.52	0.92	0.58	0.85	2.03	7179	950	4	0	5	0	0	logfile
✔	8WMD	37650	2025-05-23	2023-10-03	2.71	3.30	2.79	3.2	0.003	0.56	0.0	0.05	12.40	0.00	2.208	5.01	0.34	3.9	96.1	0.0	0.09	0.80	0.82	2.93	3.1	0.003	0.60	0.0	0.04	13.61	0.00	2.421	4.93	1.45	3.5	96.5	0.0	0.14	1.51	0.81	0.84	2.80	24429	3063	6	0	33	0	0	logfile
✔	8WML	37655	2025-05-15	2023-10-03	2.86	3.12	3.00	3.1	0.010	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.005	0.65	0.0	0.04	17.32	0.01	2.390	3.73	1.19	4.5	95.5	0.0	-0.41	0.47	0.72	0.85	2.88	13283	1543	4	38	4	0	0	logfile
✔	8WMC	37649	2025-05-18	2023-10-03	2.9	3.27	3.05	3.3	0.004	0.68	0.0	0.04	14.80	0.00	2.108	1.47	0.00	2.6	97.4	0.0	-0.05	0.70	0.83	3.00	3.3	0.002	0.53	0.0	0.04	17.18	0.00	2.372	2.86	1.50	2.8	97.2	0.0	0.26	0.40	0.69	0.85	2.66	16929	1983	4	38	4	0	0	logfile
✔	8WMA	37647	2025-05-09	2023-10-03	3.47	2.40	3.35	2.3	0.007	0.81	0.0	0.05	11.97	0.00	1.739	5.91	0.31	4.4	95.6	0.0	-0.62	0.68	0.73	3.00	2.0	0.004	0.65	0.0	0.04	15.41	0.00	2.522	7.03	1.86	3.4	96.6	0.0	0.53	0.47	0.70	0.74	2.08	3172	413	2	0	0	0	0	logfile
✔	8WMi	37653	2025-05-13	2023-10-03	3.53	4.01	3.71	3.9	0.003	0.68	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.004	0.63	0.0	0.04	17.62	0.00	2.518	6.71	1.60	6.6	93.4	0.0	-0.94	0.46	0.76	0.80	2.07	10763	1237	3	39	4	0	0	logfile

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