Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WLo	37626	2025-05-30	2023-09-30	2.62	3.59	2.69	2.8	0.004	0.69	0.0	0.05	16.70	0.00	2.086	8.36	0.60	3.3	96.7	0.0	0.17	0.83	0.70	2.23	2.9	0.003	0.64	0.0	0.05	15.42	0.00	2.330	5.90	1.87	3.2	96.8	0.0	0.40	0.41	0.88	0.89	2.51	30464	3784	20	0	50	0	0	logfile
✔	8QoT	18541	2025-05-11	2023-09-29	3.2	2.66	3.10	2.2	0.004	0.63	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	3.0	0.004	0.67	0.0	0.04	15.02	0.00	2.584	7.13	1.93	3.5	96.5	0.0	0.91	1.15	0.79	0.81	2.77	7493	968	5	0	0	0	0	logfile
✔	8WLA	37614	2025-05-15	2023-09-29	3.4	3.89	3.57	8.0	0.003	0.56	0.0	0.04	14.62	0.01	1.295	5.55	0.71	2.1	97.9	0.0	2.13	0.26	0.03	0.24	3.7	0.004	0.84	1.0	0.05	16.58	0.01	2.354	19.63	2.47	4.2	95.8	0.0	0.16	1.59	0.39	0.26	0.29	13360	1670	2	0	0	0	0	logfile
✔	8QP5	18543	2025-05-15	2023-09-29	4.4	3.76	4.19	3.6	0.003	0.63	0.0	0.04	13.40	0.00	2.113	15.18	0.17	8.0	92.0	0.0	-1.49	0.69	0.79	—	3.6	0.005	0.70	0.0	0.05	13.62	0.00	2.458	12.28	0.09	8.9	91.1	0.0	-1.93	0.36	0.69	0.80	—	12554	1746	6	0	0	0	0	logfile
✔	8WL6	37612	2025-05-14	2023-09-29	3.16	3.38	3.22	3.4	0.003	0.62	0.0	0.04	16.84	0.00	2.204	6.76	0.32	5.6	94.1	0.3	0.18	0.65	0.79	1.50	3.4	0.003	0.58	0.0	0.04	17.21	0.00	2.489	5.37	2.49	5.3	94.7	0.0	0.84	0.39	0.62	0.78	1.29	11922	1489	1	0	0	0	0	logfile
✔	8UD3	42145	2025-05-18	2023-09-28	2.67	2.87	2.73	2.9	0.003	0.53	0.0	0.05	18.22	0.00	2.217	7.41	0.65	1.4	98.6	0.0	0.47	0.67	0.79	4.45	2.9	0.003	0.53	0.0	0.05	17.84	0.00	2.455	5.54	1.56	1.9	98.1	0.0	0.65	0.98	0.70	0.82	4.04	17244	2076	8	34	0	0	0	logfile
✔	8UD2	42144	2025-05-18	2023-09-28	2.33	2.43	2.34	2.5	0.003	0.53	0.0	0.05	16.45	0.00	2.293	6.23	1.08	1.5	98.5	0.0	0.47	0.70	0.83	4.28	2.5	0.002	0.51	0.0	0.04	16.72	0.00	2.614	4.36	1.08	1.3	98.7	0.0	0.67	0.96	0.72	0.84	4.65	16530	2076	6	0	0	0	0	logfile
✔	8UD4	42146	2025-05-18	2023-09-28	3.25	3.46	3.27	3.5	0.003	0.56	0.0	0.05	17.65	0.00	2.204	7.62	0.43	1.6	98.4	0.0	0.49	0.69	0.80	3.51	3.5	0.003	0.54	0.0	0.04	17.45	0.00	2.446	5.51	1.61	2.0	98.0	0.0	0.48	0.99	0.73	0.82	3.32	17498	2076	8	46	0	0	0	logfile
✔	8WKT	37607	2025-05-21	2023-09-28	3.86	4.38	3.99	4.0	0.004	0.63	0.0	0.04	18.08	0.00	2.197	9.84	0.62	4.2	95.8	0.0	-0.40	0.87	0.80	1.06	4.0	0.002	0.60	0.0	0.04	18.16	0.00	2.433	8.17	2.15	3.4	96.6	0.0	0.56	0.78	0.88	0.85	1.26	21944	2644	5	0	0	0	0	logfile
✔	8WKX	37610	2025-05-18	2023-09-28	4.15	4.52	4.18	4.2	0.003	0.58	0.0	0.04	14.27	0.00	1.594	11.38	0.05	4.7	95.3	0.0	-0.59	0.83	0.80	—	4.2	0.003	0.61	0.0	0.04	14.68	0.00	2.388	10.28	0.00	5.1	94.9	0.0	-0.37	0.53	0.84	0.81	—	16555	1988	2	0	0	0	0	logfile
✔	8UDL	42150	2025-05-17	2023-09-28	2.37	1.99	2.42	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.6	0.004	0.79	0.0	0.05	19.10	0.01	2.436	6.32	3.49	4.4	95.6	0.0	0.26	2.69	0.67	0.78	2.47	15245	1783	5	46	0	0	0	logfile
✔	8UDG	42149	2025-05-20	2023-09-28	4.98	6.27	5.62	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.54	0.0	0.04	12.25	0.00	2.271	8.19	0.00	4.5	95.4	0.2	0.33	1.05	0.87	0.77	—	19524	1317	7	0	0	0	9627	logfile
✔	8QoE	18535	2025-05-19	2023-09-28	3.16	3.80	3.17	3.5	0.019	2.44	121.0	0.22	14.31	0.01	1.749	4.38	0.84	3.4	96.6	0.0	-2.30	0.75	0.78	2.78	3.6	0.003	0.56	0.0	0.04	15.46	0.00	2.450	2.92	0.42	3.1	96.9	0.0	1.47	0.69	0.73	0.80	1.68	17816	1136	2	0	0	0	9072	logfile
✔	8UD5	42147	2025-05-18	2023-09-28	3.13	3.33	3.15	3.3	0.002	0.49	0.0	0.05	18.01	0.00	2.238	7.88	0.27	1.2	98.8	0.0	0.54	0.71	0.81	3.80	3.3	0.002	0.50	0.0	0.04	17.73	0.00	2.467	5.21	1.67	2.1	97.9	0.0	0.51	0.99	0.70	0.81	3.60	17664	2076	8	54	0	0	0	logfile
✔	8WKN	37603	2025-05-21	2023-09-28	3.4	3.81	3.44	3.6	0.014	0.67	0.0	0.04	16.08	0.01	2.214	6.49	0.30	4.5	95.4	0.1	0.67	0.88	0.89	1.92	3.6	0.003	0.68	1.0	0.04	16.45	0.00	2.413	4.32	1.44	3.4	96.6	0.0	1.12	0.33	0.88	0.89	1.69	21526	2607	5	0	0	0	0	logfile
✔	8UCS	42139	2025-05-15	2023-09-27	2.4	2.51	2.38	2.5	0.003	0.49	0.0	0.04	18.16	0.00	2.235	8.78	0.36	3.0	97.0	0.0	0.55	0.66	0.81	2.59	2.5	0.003	0.55	0.0	0.04	18.42	0.00	2.518	8.12	3.13	3.7	96.3	0.0	2.30	0.75	0.67	0.85	2.20	12605	1632	12	0	0	2	0	logfile
✔	8WK6	37596	2025-05-18	2023-09-27	2.64	3.71	2.64	3.2	0.003	0.57	0.0	0.04	17.81	0.01	2.198	6.57	0.00	2.2	97.8	0.0	0.65	0.72	0.84	2.64	3.2	0.002	0.62	0.0	0.04	14.14	0.00	2.369	5.25	0.21	2.8	97.2	0.0	1.36	0.32	0.72	0.86	2.54	17460	2144	16	0	22	0	0	logfile
✔	8WJX	37591	2025-05-11	2023-09-26	3.2	3.53	3.21	3.5	0.005	0.69	0.0	0.04	14.06	0.00	2.148	7.80	0.00	5.9	93.9	0.2	-0.19	0.59	0.74	2.72	3.5	0.003	0.61	0.0	0.04	15.43	0.00	2.467	7.45	3.36	5.3	94.7	0.0	0.35	0.43	0.58	0.74	2.21	7535	1034	6	0	2	0	0	logfile
✔	8UCD	42124	2025-05-12	2023-09-26	3.0	3.31	2.98	3.3	0.007	0.86	0.0	0.04	17.94	0.00	2.171	4.36	0.12	4.4	95.6	0.0	0.96	0.64	0.82	2.47	3.3	0.003	0.58	0.0	0.04	17.08	0.00	2.528	3.69	0.73	5.2	94.8	0.0	2.02	0.92	0.60	0.82	2.06	8058	939	8	0	9	1	0	logfile
✔	8WJH	37580	2025-05-09	2023-09-26	3.1	3.36	3.15	3.5	0.006	1.27	1.0	0.07	15.61	0.01	2.256	5.20	1.00	2.8	97.2	0.0	0.63	0.46	0.72	1.31	3.5	0.004	0.64	0.0	0.04	16.43	0.00	2.633	4.94	2.25	1.6	98.4	0.0	1.92	0.47	0.39	0.67	1.41	3824	505	2	0	1	0	0	logfile

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