Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QMP	18506	2025-05-16	2023-09-25	3.3	3.53	3.34	3.5	0.003	0.50	0.0	0.04	16.72	0.00	1.392	9.71	0.00	4.2	95.8	0.0	0.47	0.61	0.72	0.91	3.6	0.003	0.52	0.0	0.04	17.03	0.00	1.974	7.07	2.11	3.6	96.4	0.0	0.40	0.22	0.61	0.72	0.90	13998	913	2	0	2	0	7087	logfile
✔	8WiS	37567	2025-05-14	2023-09-25	2.78	2.99	2.83	3.4	0.004	0.71	0.0	0.05	19.08	0.00	2.228	4.90	0.00	2.6	97.4	0.0	-0.26	0.44	0.65	2.76	3.3	0.006	0.97	1.0	0.06	15.85	0.00	1.838	4.42	2.73	3.4	96.6	0.0	-0.73	0.77	0.63	0.81	3.26	11616	1437	15	0	42	0	0	logfile
✔	8QN7	18509	2025-05-09	2023-09-25	2.7	2.38	2.17	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.52	0.0	0.05	18.43	0.00	2.686	2.83	2.76	6.7	93.3	0.0	-3.32	1.19	0.43	0.92	6.17	1455	190	5	0	0	0	0	logfile
✔	8QN8	18511	2025-05-27	2023-09-25	3.14	3.52	3.20	3.1	0.003	0.50	0.0	0.04	13.60	0.00	1.991	4.58	0.00	3.2	96.8	0.0	0.74	0.87	0.80	2.97	3.1	0.005	0.60	0.0	0.04	15.28	0.00	1.978	5.89	1.34	3.4	96.6	0.0	0.87	1.04	0.91	0.89	2.71	29410	3792	9	0	3	0	0	logfile
✔	8QN4	18507	2025-05-15	2023-09-25	3.36	3.57	3.36	3.6	0.017	2.08	13.0	0.12	14.78	0.02	2.210	5.85	0.76	5.6	94.2	0.1	-2.00	0.53	0.46	0.71	3.5	0.005	0.98	1.0	0.05	16.84	0.00	2.283	13.54	4.36	4.0	96.0	0.0	-0.83	1.84	0.69	0.72	1.52	13608	1742	6	0	0	0	0	logfile
✔	8UBY	42109	2025-05-10	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.004	0.52	0.0	0.03	14.89	0.00	2.545	3.78	1.69	2.2	97.8	0.0	3.78	0.89	0.61	0.87	3.35	6756	419	2	0	4	46	3345	logfile
✔	8UC3	42114	2025-05-10	2023-09-25	2.78	3.15	2.79	3.1	0.006	0.92	0.0	0.05	16.35	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.62	0.0	0.04	16.78	0.01	2.590	5.67	2.44	2.9	97.1	0.0	1.76	1.35	0.48	0.72	1.59	4304	556	6	0	2	0	0	logfile
✔	8UC8	42117	2025-05-16	2023-09-25	3.0	3.11	2.86	3.1	0.013	1.84	0.0	0.09	15.10	0.01	2.197	5.40	0.60	3.8	96.2	0.0	-1.40	0.59	0.71	5.06	3.1	0.003	0.57	0.0	0.04	15.38	0.00	2.592	9.33	0.97	1.7	98.3	0.0	1.53	1.23	0.73	0.82	3.76	14804	1936	8	0	16	0	0	logfile
✔	8WJ3	37577	2025-05-22	2023-09-25	3.36	3.68	3.46	3.7	0.006	0.60	0.0	0.04	12.89	0.00	1.975	10.24	0.08	5.5	94.4	0.0	-1.82	0.66	0.68	1.85	3.7	0.003	0.65	0.0	0.05	15.41	0.00	1.998	8.30	2.00	4.6	95.4	0.0	-1.08	0.58	0.67	0.70	1.26	22648	2972	8	0	6	0	0	logfile
✔	8UBV	42106	2025-05-10	2023-09-25	4.1	4.24	4.03	4.1	0.005	1.00	0.0	0.05	17.20	0.00	1.956	24.13	3.88	16.0	83.9	0.1	-3.69	0.64	0.57	—	4.1	0.004	0.83	0.0	0.05	17.29	0.00	2.400	16.14	3.75	13.7	86.3	0.0	-3.37	1.24	0.65	0.55	—	6603	852	4	0	0	0	0	logfile
✔	8UBZ	42110	2025-05-10	2023-09-25	3.02	3.57	3.01	3.4	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.004	0.56	0.0	0.04	15.14	0.00	2.505	7.20	1.99	2.9	97.1	0.0	3.12	0.78	0.60	0.83	2.32	6674	415	2	0	4	26	3315	logfile
✔	8WiV	37569	2025-05-22	2023-09-25	3.41	3.68	3.49	3.7	0.008	0.65	0.0	0.05	12.55	0.00	1.285	10.64	0.04	7.9	92.0	0.0	-1.85	0.68	0.72	1.80	3.7	0.003	0.64	0.0	0.05	15.56	0.00	1.949	7.53	2.44	4.4	95.6	0.0	-1.04	1.22	0.69	0.74	1.30	22622	2944	9	0	8	0	0	logfile
✔	8UC0	42111	2025-05-10	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.003	0.53	0.0	0.04	13.81	0.00	2.474	2.17	0.84	2.6	97.4	0.0	3.47	0.91	0.64	0.88	3.75	6861	422	2	0	3	102	3375	logfile
✔	8UC1	42112	2025-05-13	2023-09-25	3.4	3.74	3.41	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.58	0.0	0.04	15.10	0.00	2.597	8.36	3.35	3.8	96.1	0.2	1.67	0.38	0.59	0.79	2.31	10310	1336	4	0	2	0	0	logfile
✔	8UC7	42116	2025-05-16	2023-09-25	2.9	3.13	2.84	3.1	0.015	1.75	4.0	0.09	13.19	0.01	2.560	2.24	0.00	1.7	98.3	0.0	-0.57	0.61	0.79	6.07	3.1	0.003	0.55	0.0	0.04	15.44	0.00	2.629	5.91	0.52	1.7	98.3	0.0	2.19	1.26	0.73	0.87	4.87	14840	1936	8	0	16	0	0	logfile
✔	8Wi2	37555	2025-05-13	2023-09-24	4.06	4.53	4.14	4.3	0.003	0.66	0.0	0.04	17.70	0.00	2.106	11.61	0.67	3.1	96.9	0.0	2.17	0.67	0.79	—	4.3	0.004	0.67	0.0	0.04	14.28	0.00	2.508	9.80	0.00	3.4	96.6	0.0	1.86	1.34	0.69	0.79	—	9537	1214	2	0	0	0	0	logfile
✔	8Wi5	37558	2025-05-13	2023-09-24	3.46	3.75	3.43	3.7	0.002	0.47	0.0	0.04	16.84	0.01	2.198	6.30	0.47	2.3	97.7	0.0	2.62	0.54	0.62	0.66	3.7	0.003	0.56	0.0	0.04	17.19	0.00	2.342	5.39	2.35	3.0	97.0	0.0	1.92	0.55	0.64	0.78	1.52	9735	1242	2	0	0	0	0	logfile
✔	8UBR	42101	2025-05-12	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.50	0.0	0.04	17.91	0.00	2.028	3.55	2.17	1.4	98.6	0.0	2.44	0.80	0.61	0.84	2.66	9440	1156	2	0	9	4	0	logfile
✔	8UBT	42102	2025-05-12	2023-09-24	3.1	3.42	3.13	3.5	0.002	0.71	0.0	0.04	18.97	0.00	2.114	9.21	1.94	11.7	87.9	0.5	-2.09	0.63	0.76	2.34	3.5	0.002	0.65	0.0	0.04	18.77	0.00	2.399	5.79	3.58	10.9	88.8	0.3	-1.04	0.91	0.67	0.80	2.04	8642	1082	4	0	0	0	0	logfile
✔	8Wi3	37556	2025-05-13	2023-09-24	3.38	3.85	3.52	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.004	0.64	0.0	0.04	17.62	0.00	2.453	4.53	3.85	7.1	92.8	0.2	1.29	0.34	0.63	0.80	0.52	9489	1208	1	0	0	0	0	logfile

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