Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K13	36785	2025-05-12	2023-07-10	3.33	3.76	3.47	3.7	0.003	0.59	0.0	0.04	16.51	0.00	2.205	9.59	0.40	2.2	97.8	0.0	0.67	0.62	0.69	1.38	3.7	0.003	0.69	0.0	0.05	17.25	0.00	2.490	9.03	3.74	3.3	96.7	0.0	0.83	2.05	0.57	0.72	1.61	9078	1118	4	0	6	0	0	logfile
✔	8PPT	17815	2025-05-20	2023-07-10	2.9	3.15	2.98	3.2	0.003	0.58	0.0	0.04	19.22	0.00	1.950	6.05	2.82	3.8	96.2	0.0	-0.19	0.71	0.84	2.71	3.2	0.003	0.61	0.0	0.04	19.47	0.00	1.932	4.95	2.96	4.0	96.0	0.0	-0.02	0.32	0.72	0.86	2.63	19620	2376	9	34	6	0	0	logfile
✔	8K1A	36790	2025-05-22	2023-07-10	3.28	2.85	3.32	3.1	0.005	0.80	0.0	0.05	14.95	0.00	2.198	8.48	0.00	6.9	93.1	0.0	-2.44	0.66	0.78	3.39	3.0	0.003	0.59	0.0	0.04	17.17	0.00	2.395	4.95	2.80	6.1	93.9	0.0	-1.77	0.32	0.66	0.80	2.91	24001	2963	4	0	0	0	0	logfile
✔	8K0M	36774	2025-05-13	2023-07-09	3.17	3.37	3.20	3.4	0.003	0.58	0.0	0.04	17.60	0.00	1.975	4.27	0.39	4.0	95.8	0.2	0.17	0.67	0.81	2.08	3.4	0.002	0.55	0.0	0.04	17.79	0.00	2.024	3.69	3.06	4.8	95.2	0.0	0.94	0.26	0.61	0.76	1.57	9641	1186	5	0	6	0	0	logfile
✔	8PPR	17814	2025-05-14	2023-07-08	3.0	3.16	3.04	3.3	0.003	0.63	0.0	0.04	14.03	0.00	2.133	12.50	0.00	2.1	97.8	0.1	3.16	0.77	0.74	1.10	3.3	0.003	0.60	0.0	0.04	16.37	0.00	2.468	7.84	1.26	2.3	97.7	0.0	3.28	0.56	0.77	0.76	1.26	11354	1388	9	0	0	1	0	logfile
✔	8K0F	36763	2025-05-13	2023-07-08	3.37	3.03	3.28	3.4	0.004	0.63	0.0	0.04	18.66	0.00	2.114	4.87	0.00	3.8	96.2	0.1	0.29	0.69	0.80	2.26	3.4	0.003	0.55	0.0	0.04	17.77	0.00	2.107	3.97	1.98	3.4	96.6	0.0	1.29	1.14	0.66	0.79	1.97	9595	1182	5	0	5	0	0	logfile
✔	8K0B	36759	2025-05-10	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	2.0	0.004	0.79	0.0	0.04	17.55	0.00	2.415	11.73	5.27	8.3	91.7	0.0	-0.54	0.42	0.54	0.54	0.54	5689	689	1	0	0	0	0	logfile
✔	8K0D	36761	2025-05-15	2023-07-08	2.94	3.57	2.96	3.4	0.004	0.63	0.0	0.05	10.65	0.00	2.065	12.63	0.00	4.6	95.3	0.1	-1.60	0.81	0.84	3.56	3.4	0.004	0.90	1.0	0.05	13.60	0.00	1.885	11.79	0.99	4.8	95.2	0.0	-0.95	0.49	0.82	0.87	3.19	13282	1714	6	0	0	0	0	logfile
✔	8K0C	36760	2025-05-17	2023-07-08	3.18	3.97	3.42	3.6	0.008	0.91	0.0	0.06	8.92	0.01	2.248	5.55	0.00	5.7	94.2	0.1	-3.42	0.84	0.80	2.51	3.6	0.004	0.66	0.0	0.05	12.86	0.00	2.478	11.00	1.54	4.8	95.2	0.0	-1.09	1.80	0.84	0.85	2.13	15262	1986	8	0	0	0	0	logfile
✔	8K0E	36762	2025-05-11	2023-07-08	3.65	4.35	3.82	4.2	0.004	0.74	0.0	0.04	21.03	0.01	2.098	8.36	0.12	4.2	95.8	0.0	1.22	0.75	0.79	1.50	4.3	0.003	0.68	0.0	0.04	18.93	0.00	2.328	5.16	1.96	3.3	96.7	0.0	1.96	1.16	0.76	0.79	1.51	8300	1008	7	0	9	0	0	logfile
✔	8PPo	17806	2025-05-09	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	14.12	0.00	2.639	0.29	1.04	0.0	100.0	0.0	1.15	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	8K0A	36758	2025-05-16	2023-07-07	3.12	3.92	3.21	3.6	0.003	0.61	0.0	0.04	15.54	0.00	2.189	5.09	0.00	2.3	97.7	0.0	-0.50	0.88	0.82	3.69	3.6	0.003	0.54	0.0	0.04	16.84	0.00	2.507	3.62	1.21	2.6	97.4	0.0	1.22	0.71	0.87	0.88	3.46	14952	1845	6	0	0	0	0	logfile
✔	8TF3	41218	2025-05-20	2023-07-07	2.94	3.18	2.97	3.2	0.012	1.80	4.0	0.09	14.59	0.02	2.356	4.45	0.00	2.7	97.3	0.0	-0.94	0.57	0.83	5.13	3.3	0.003	0.59	0.0	0.04	15.97	0.00	2.535	5.50	1.59	1.3	98.7	0.0	2.27	0.53	0.64	0.86	3.34	19888	2408	8	0	20	0	0	logfile
✔	8TF4	41219	2025-05-20	2023-07-07	2.86	3.17	2.99	3.2	0.012	1.77	0.0	0.09	15.62	0.01	2.302	5.28	0.58	2.0	98.0	0.0	-0.60	0.57	0.85	4.97	3.2	0.003	0.59	0.0	0.04	16.37	0.00	2.295	4.70	1.15	1.3	98.7	0.0	2.10	0.93	0.63	0.87	3.92	19888	2408	8	0	20	0	0	logfile
✔	8K04	36757	2025-05-23	2023-07-07	2.72	3.89	2.75	3.4	0.011	0.78	0.0	0.05	12.97	0.00	2.118	10.60	0.00	8.0	92.0	0.0	0.14	0.87	0.88	3.91	3.3	0.003	0.56	0.0	0.04	14.28	0.00	2.503	3.93	0.79	4.3	95.7	0.0	1.54	0.67	0.86	0.87	3.37	24120	3140	10	0	0	0	0	logfile
✔	8TF2	41217	2025-05-20	2023-07-07	2.57	2.79	2.66	2.8	0.012	1.75	3.0	0.09	15.41	0.01	2.484	4.43	0.38	1.5	98.5	0.0	0.29	0.57	0.85	5.52	2.9	0.003	0.56	0.0	0.04	16.57	0.00	2.371	4.68	2.16	1.3	98.7	0.0	1.98	1.72	0.66	0.89	4.52	19856	2408	8	0	24	0	0	logfile
✔	8PPQ	17808	2025-05-27	2023-07-07	3.9	2.53	3.76	4.0	0.013	1.93	6.0	0.10	13.26	0.02	2.512	1.60	0.00	5.3	94.7	0.0	-0.52	0.62	0.65	1.68	4.0	0.003	0.62	0.0	0.04	15.85	0.00	2.343	7.22	1.71	5.7	94.3	0.0	-0.66	1.68	0.61	0.65	1.46	29355	1923	9	0	3	0	14659	logfile
✔	8TEi	41187	2025-05-13	2023-07-06	2.58	2.31	2.45	2.6	0.025	0.69	0.0	0.04	21.72	0.01	2.028	3.45	0.00	1.6	98.4	0.0	2.53	0.66	0.84	3.91	2.6	0.003	0.58	0.0	0.04	19.34	0.00	2.438	5.02	1.39	1.6	98.4	0.0	1.97	0.92	0.66	0.88	3.66	9816	1108	6	0	24	214	0	logfile
✔	8TEQ	41195	2025-05-10	2023-07-06	2.84	3.16	2.28	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.003	0.60	0.0	0.04	18.69	0.00	2.575	3.76	2.72	4.6	95.4	0.0	-2.96	0.47	0.64	0.93	5.82	6705	825	30	0	0	0	0	logfile
✔	8TEL	41190	2025-05-11	2023-07-06	2.77	2.48	2.67	2.8	0.004	0.55	0.0	0.04	17.77	0.00	2.075	3.10	1.20	4.2	95.8	0.0	2.33	0.63	0.86	2.14	2.7	0.002	0.50	0.0	0.04	17.97	0.00	2.521	4.05	1.79	3.5	96.5	0.0	2.65	0.91	0.63	0.87	2.47	7806	988	2	0	0	0	0	logfile

• ← previous
• Page 190 of 642
• next →