Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JZX	36754	2025-05-11	2023-07-06	2.5	2.84	2.47	2.9	0.011	1.14	0.0	0.06	11.30	0.01	2.300	8.04	0.28	6.1	93.7	0.2	-6.11	0.65	0.85	4.84	2.9	0.003	0.70	0.0	0.04	13.60	0.00	2.419	6.17	1.14	4.4	95.2	0.4	1.89	1.34	0.60	0.85	3.23	7108	910	4	0	8	0	0	logfile
✔	8TER	41198	2025-05-10	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.003	0.55	0.0	0.04	19.93	0.00	2.679	2.29	5.17	3.2	96.8	0.0	-3.92	0.85	0.65	0.90	6.57	5780	700	40	0	0	240	0	logfile
✔	8JZS	36752	2025-05-11	2023-07-06	2.95	3.15	2.91	3.2	0.008	0.96	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.003	0.61	0.0	0.04	14.78	0.00	2.554	4.92	2.26	4.5	95.5	0.0	1.60	1.23	0.63	0.83	2.24	7500	972	4	0	6	0	0	logfile
✔	8JZZ	36755	2025-05-12	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.003	0.61	0.0	0.04	15.19	0.00	2.555	7.83	3.12	4.8	95.2	0.0	-0.38	0.97	0.60	0.71	2.35	8680	1198	6	0	0	0	0	logfile
✔	8TEQ	41195	2025-05-10	2023-07-06	2.84	3.16	2.28	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.003	0.60	0.0	0.04	18.69	0.00	2.575	3.76	2.72	4.6	95.4	0.0	-2.96	0.47	0.64	0.93	5.82	6705	825	30	0	0	0	0	logfile
✔	8PP6	17796	2025-05-15	2023-07-06	3.18	3.69	3.07	3.9	0.005	0.58	0.0	0.03	26.62	0.00	2.263	3.50	0.14	2.1	97.9	0.0	1.64	0.84	0.80	2.51	3.9	0.003	0.60	0.0	0.03	26.97	0.00	2.356	7.85	2.05	2.3	97.7	0.0	2.36	0.63	0.86	0.86	2.02	13318	872	13	312	1	0	0	logfile
✔	8TEM	41191	2025-05-11	2023-07-06	3.02	2.66	2.92	3.0	0.003	0.56	0.0	0.04	17.16	0.00	2.092	3.52	1.87	3.6	96.4	0.0	1.84	0.59	0.82	2.19	3.0	0.003	0.57	0.0	0.04	17.12	0.00	2.535	3.58	2.58	2.2	97.8	0.0	2.61	0.50	0.61	0.85	1.95	7992	1010	2	0	0	0	0	logfile
✔	8TEo	41193	2025-05-10	2023-07-06	2.39	2.54	2.26	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.003	0.51	0.0	0.04	14.23	0.00	2.614	5.15	1.51	1.1	98.9	0.0	3.67	0.90	0.65	0.89	5.16	6507	784	12	0	34	9	0	logfile
✔	8JZP	36750	2025-05-12	2023-07-06	3.45	3.73	3.50	3.8	0.004	0.75	1.0	0.04	14.16	0.01	2.180	7.53	0.73	6.2	93.8	0.0	-0.64	0.67	0.76	2.41	3.8	0.004	0.71	0.0	0.04	15.43	0.00	2.176	9.46	3.90	5.4	94.6	0.0	-0.42	0.99	0.65	0.75	2.10	8622	1199	6	0	0	0	0	logfile
✔	8TEG	41185	2025-05-10	2023-07-06	2.15	2.08	2.12	2.1	0.007	0.74	0.0	0.04	15.68	0.00	2.185	1.68	1.05	1.4	98.6	0.0	1.81	0.63	0.88	4.56	2.2	0.003	0.57	0.0	0.04	16.00	0.00	2.609	2.12	1.48	1.4	98.6	0.0	2.13	1.20	0.63	0.88	4.84	4518	561	4	0	0	88	0	logfile
✔	8TEK	41189	2025-05-17	2023-07-06	3.6	2.85	3.87	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.8	0.015	0.78	0.0	0.04	19.05	0.00	2.127	15.90	2.82	3.6	96.3	0.1	0.00	2.28	0.19	0.67	0.58	15250	1817	10	0	0	0	0	logfile
✔	8JZU	36753	2025-05-09	2023-07-06	3.05	3.36	3.10	3.4	0.004	0.63	0.0	0.04	13.67	0.00	2.206	6.34	0.00	2.1	97.9	0.0	1.94	0.54	0.74	2.37	3.4	0.003	0.59	0.0	0.04	15.89	0.00	2.561	8.86	3.09	2.3	97.7	0.0	1.63	1.65	0.58	0.81	2.63	3741	488	3	0	1	0	0	logfile
✔	8PP7	17797	2025-05-17	2023-07-06	2.91	3.46	2.95	3.2	0.004	0.60	0.0	0.04	25.19	0.00	2.222	2.26	0.69	2.9	97.1	0.0	0.98	0.81	0.77	2.20	3.2	0.005	0.60	0.0	0.04	25.92	0.00	2.324	4.62	1.98	2.3	97.7	0.0	1.51	0.52	0.84	0.87	2.20	15562	1165	18	306	8	0	0	logfile
✔	8TEL	41190	2025-05-11	2023-07-06	2.77	2.48	2.67	2.8	0.004	0.55	0.0	0.04	17.77	0.00	2.075	3.10	1.20	4.2	95.8	0.0	2.33	0.63	0.86	2.14	2.7	0.002	0.50	0.0	0.04	17.97	0.00	2.521	4.05	1.79	3.5	96.5	0.0	2.65	0.91	0.63	0.87	2.47	7806	988	2	0	0	0	0	logfile
✔	8TDV	41174	2025-05-14	2023-07-05	3.44	3.66	3.42	3.6	0.002	0.53	0.0	0.04	14.04	0.00	2.000	6.00	0.53	7.4	92.6	0.0	-0.51	0.53	0.61	1.95	3.6	0.004	0.66	0.0	0.04	16.36	0.00	2.037	7.71	4.63	7.9	92.1	0.0	-0.12	1.35	0.53	0.67	1.25	10957	1740	8	13	2	0	0	logfile
✔	8JZN	36748	2025-05-16	2023-07-05	2.47	2.92	2.74	2.9	0.019	1.12	0.0	0.08	21.23	0.00	1.784	9.87	1.91	4.2	95.8	0.0	-2.06	0.61	0.79	3.69	2.9	0.002	0.59	0.0	0.04	16.57	0.00	2.510	6.33	2.14	3.5	96.5	0.0	1.22	1.55	0.57	0.77	2.94	12831	1489	3	0	20	0	0	logfile
✔	8JZB	36741	2025-05-18	2023-07-05	2.76	3.65	2.89	3.2	0.007	1.05	0.0	0.06	19.24	0.01	2.240	6.94	6.93	2.1	97.7	0.1	0.59	0.87	0.91	3.32	3.2	0.006	0.73	0.0	0.05	16.69	0.00	2.384	4.64	1.65	2.8	97.2	0.0	0.40	0.45	0.83	0.87	3.46	16660	2120	12	0	15	0	0	logfile
✔	8PoK	17793	2025-05-11	2023-07-05	3.4	3.50	3.48	3.4	0.007	0.99	4.0	0.06	10.58	0.01	2.115	7.67	0.46	10.5	89.5	0.0	-2.24	0.57	0.78	2.62	3.4	0.003	0.62	0.0	0.04	14.77	0.00	2.441	4.05	2.53	7.6	92.4	0.0	-0.56	0.58	0.62	0.83	2.20	8042	1024	6	0	1	0	0	logfile
✔	8TDW	41175	2025-05-14	2023-07-05	3.04	3.24	3.20	3.2	0.005	0.56	0.0	0.05	14.08	0.00	2.217	6.55	0.00	5.6	94.4	0.0	-0.08	0.39	0.50	3.22	3.2	0.002	0.52	0.0	0.04	15.20	0.00	2.085	3.80	2.66	4.6	95.4	0.0	0.89	0.34	0.54	0.71	2.72	11359	1830	8	12	2	0	0	logfile
✔	8TEA	41179	2025-05-10	2023-07-05	3.4	2.31	—	2.0	0.004	0.75	0.0	0.05	13.18	0.01	2.256	5.80	0.30	4.4	95.6	0.0	-0.71	0.72	0.68	2.75	2.1	0.004	0.69	0.0	0.04	15.06	0.00	2.300	9.92	3.16	5.0	95.0	0.0	-0.64	0.41	0.72	0.69	2.66	6054	780	7	0	0	0	0	logfile

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