Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PoP	17794	2025-05-11	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	20.03	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.004	0.65	0.0	0.04	22.02	0.00	2.544	4.48	2.39	0.5	99.5	0.0	3.41	1.39	0.71	0.84	1.67	8929	953	11	56	0	0	0	logfile
✔	8JZ7	36736	2025-05-12	2023-07-04	2.6	2.26	—	1.9	0.006	0.87	0.0	0.05	13.85	0.01	2.197	15.42	0.61	7.0	93.0	0.0	-2.16	0.75	0.73	2.54	1.9	0.004	0.74	0.0	0.05	16.58	0.00	2.530	7.79	1.93	5.2	94.8	0.0	-0.98	0.48	0.76	0.75	1.98	9042	1144	6	0	1	0	0	logfile
✔	8PoE	17789	2025-05-13	2023-07-04	4.2	4.40	4.16	4.5	0.003	0.64	0.0	0.04	14.20	0.00	2.265	9.34	0.00	2.8	97.2	0.0	1.48	0.57	0.71	—	4.4	0.003	0.63	0.0	0.04	14.57	0.00	2.407	6.32	0.00	2.8	97.0	0.1	1.41	1.16	0.57	0.72	—	10947	1371	3	0	0	0	0	logfile
✔	8PoG	17791	2025-05-10	2023-07-04	4.15	4.36	4.08	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.004	0.61	0.0	0.04	16.46	0.00	2.569	5.64	0.00	2.8	97.2	0.0	1.95	1.94	0.77	0.80	—	4964	624	4	0	0	0	0	logfile
✔	8PoH	17792	2025-05-21	2023-07-04	3.3	3.52	3.34	3.5	0.003	0.56	0.0	0.04	18.79	0.00	2.001	6.79	2.37	3.1	96.9	0.0	0.11	0.69	0.80	2.24	3.5	0.003	0.73	0.0	0.04	18.71	0.00	1.951	5.06	3.05	3.3	96.7	0.0	0.34	0.35	0.76	0.82	2.13	20729	2479	11	38	1	0	0	logfile
✔	8TDo	41172	2025-05-09	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.005	0.57	0.0	0.05	15.20	0.00	2.443	8.53	2.22	5.3	94.7	0.0	-3.43	0.34	0.51	0.85	4.79	2892	372	4	0	0	0	0	logfile
✔	8TDN	41171	2025-05-09	2023-07-04	3.1	3.48	2.80	3.4	0.004	0.54	0.0	0.05	15.57	0.00	2.270	9.57	0.00	7.9	92.1	0.0	-2.86	0.59	0.86	5.30	3.4	0.006	0.62	0.0	0.05	15.74	0.00	2.640	7.77	2.03	8.8	91.2	0.0	-3.08	0.37	0.60	0.88	5.19	3620	465	5	0	0	0	0	logfile
✔	8JY5	36720	2025-05-14	2023-07-03	4.17	7.05	4.26	6.5	0.003	0.66	0.0	0.04	13.66	0.00	2.119	12.08	0.00	2.4	97.5	0.1	0.01	0.63	0.77	—	6.6	0.003	0.73	0.0	0.04	13.52	0.00	2.358	11.99	0.00	2.3	97.7	0.1	0.57	1.28	0.62	0.81	—	11511	1457	1	0	0	0	0	logfile
✔	8JYS	36730	2025-05-09	2023-07-03	4.5	4.28	3.73	4.3	0.004	0.97	0.0	0.05	17.51	0.01	2.197	20.35	1.88	12.7	86.1	1.2	-3.49	0.67	0.71	—	4.3	0.005	0.90	0.0	0.05	13.40	0.01	2.318	18.74	0.27	16.0	82.8	1.2	-3.40	1.18	0.68	0.74	—	3522	441	4	0	0	0	0	logfile
✔	8JYN	36727	2025-05-30	2023-07-03	3.04	3.39	3.01	3.2	0.003	0.58	0.0	0.05	13.71	0.00	2.203	4.51	0.00	3.7	96.3	0.0	0.42	0.80	0.83	2.17	3.1	0.002	0.59	0.0	0.04	14.02	0.00	2.426	5.04	1.05	3.8	96.1	0.0	0.37	0.56	0.82	0.87	1.99	29000	3577	18	0	59	0	0	logfile
✔	8JYL	36725	2025-05-24	2023-07-03	2.33	2.46	2.34	2.5	0.009	0.71	12.0	0.06	17.20	0.01	2.183	8.64	0.61	1.9	98.1	0.0	-0.10	0.67	0.82	4.84	2.5	0.003	0.59	0.0	0.05	17.34	0.01	2.244	6.95	2.06	2.3	97.7	0.0	0.29	0.27	0.72	0.85	4.37	25434	3162	12	0	12	0	0	logfile
✔	8JYU	36731	2025-05-24	2023-07-03	2.19	2.31	2.23	2.3	0.004	0.66	0.0	0.05	14.45	0.00	2.229	6.37	0.14	4.3	95.5	0.2	0.10	0.54	0.71	5.22	2.3	0.002	0.60	0.0	0.04	16.12	0.00	2.501	6.20	1.15	4.2	95.6	0.2	0.01	1.00	0.64	0.79	5.06	25542	3180	12	0	18	0	0	logfile
✔	8JYK	36724	2025-05-24	2023-07-03	2.59	3.04	2.60	2.8	0.003	0.59	0.0	0.05	13.58	0.00	2.202	3.95	0.00	3.5	96.5	0.0	0.20	0.85	0.86	3.49	2.8	0.002	0.55	0.0	0.04	14.13	0.00	2.551	3.30	0.61	3.2	96.8	0.0	0.51	0.28	0.85	0.86	3.49	25638	3183	15	0	54	0	0	logfile
✔	8JY7	36722	2025-05-11	2023-07-03	3.2	2.66	3.26	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.004	0.62	0.0	0.04	13.91	0.00	2.520	7.33	2.61	4.7	95.3	0.0	1.10	1.56	0.65	0.81	2.08	7292	968	4	0	0	0	0	logfile
✔	8TDL	41166	2025-05-30	2023-07-03	3.6	4.14	3.01	3.4	0.003	0.49	0.0	0.04	11.61	0.00	2.368	4.65	0.00	1.1	98.9	0.0	3.94	0.73	0.79	2.99	3.4	0.003	0.50	0.0	0.04	12.59	0.00	2.397	4.62	1.39	2.0	98.0	0.0	4.29	0.44	0.72	0.80	3.11	32732	2548	7	0	0	0	15197	logfile
✔	8JY8	36723	2025-05-11	2023-07-03	2.45	2.34	2.57	2.4	0.005	0.69	0.0	0.04	17.05	0.01	2.343	7.64	1.65	2.1	97.9	0.0	0.01	0.60	0.75	3.63	2.4	0.003	0.63	0.0	0.04	16.95	0.01	2.476	7.51	3.02	3.3	96.7	0.0	1.67	0.52	0.68	0.81	4.65	7392	968	8	0	4	0	0	logfile
✔	8JYM	36726	2025-05-24	2023-07-03	2.79	3.39	2.76	3.2	0.004	0.56	0.0	0.05	12.78	0.00	0.706	6.93	0.00	3.6	96.4	0.0	0.19	0.83	0.85	3.31	3.2	0.003	0.61	1.0	0.04	13.91	0.01	1.072	4.18	0.55	3.3	96.7	0.0	0.46	0.37	0.85	0.87	2.91	24924	3099	12	0	48	0	0	logfile
✔	8JYP	36729	2025-05-13	2023-07-03	3.38	4.15	3.48	3.8	0.003	0.65	0.0	0.05	14.64	0.00	2.291	5.18	0.00	2.5	97.5	0.0	0.39	0.84	0.84	2.35	3.8	0.002	0.59	0.0	0.04	13.44	0.00	2.529	4.10	1.00	3.2	96.8	0.0	0.98	1.07	0.84	0.84	2.44	6627	795	7	0	14	0	0	logfile
✔	8PNV	17786	2025-05-15	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.18	0.00	2.500	3.06	2.63	1.5	98.5	0.0	2.02	1.00	0.79	0.86	5.50	13098	1626	30	0	6	522	0	logfile
✔	8JY4	36719	2025-05-22	2023-07-02	3.58	4.95	3.65	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.64	0.0	0.04	16.15	0.00	2.345	9.48	2.20	3.3	96.7	0.1	1.14	0.85	0.62	0.80	0.46	22246	1383	1	0	0	0	11252	logfile

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