Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JY4	36719	2025-05-22	2023-07-02	3.58	4.95	3.65	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.64	0.0	0.04	16.15	0.00	2.345	9.48	2.20	3.3	96.7	0.1	1.14	0.85	0.62	0.80	0.46	22246	1383	1	0	0	0	11252	logfile
✔	8TCo	41156	2025-05-15	2023-07-02	2.8	2.31	—	2.1	0.003	0.65	0.0	0.05	14.09	0.01	2.138	8.05	0.00	3.5	96.5	0.0	-0.22	0.76	0.75	3.03	2.1	0.004	0.68	0.0	0.04	15.68	0.00	2.521	9.73	1.94	3.9	96.1	0.0	-0.10	1.03	0.77	0.77	2.72	13222	1633	12	0	15	0	0	logfile
✔	8JXP	36708	2025-05-10	2023-07-01	2.7	3.07	2.79	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.644	18.04	24.41	6.9	91.2	1.9	-2.49	0.65	0.81	2.45	3.0	0.004	0.63	0.0	0.04	17.99	0.00	2.605	6.12	2.35	3.1	96.5	0.4	3.16	0.98	0.62	0.88	3.18	6294	786	9	0	21	9	0	logfile
✔	8JXo	36707	2025-05-10	2023-07-01	2.7	3.04	2.80	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.645	18.53	24.41	6.9	91.2	1.9	-2.50	0.65	0.84	3.36	3.0	0.003	0.59	0.0	0.04	18.44	0.00	2.517	6.04	2.50	2.8	96.8	0.4	3.09	0.93	0.56	0.87	3.52	6294	786	9	0	21	9	0	logfile
✔	8JXR	36710	2025-05-12	2023-07-01	3.57	3.50	3.47	3.6	0.004	0.52	0.0	0.05	12.64	0.00	2.023	4.33	0.11	2.2	97.8	0.0	-1.28	0.56	0.73	1.65	3.6	0.003	0.61	0.0	0.04	15.09	0.00	2.510	6.85	2.40	2.2	97.8	0.0	1.14	0.99	0.64	0.81	2.53	8616	1108	7	0	3	0	0	logfile
✔	8JXQ	36709	2025-05-22	2023-07-01	3.32	4.45	3.31	3.8	0.006	0.68	0.0	0.04	15.07	0.01	2.035	4.63	0.41	1.4	98.5	0.1	-1.95	0.61	0.75	1.68	3.8	0.004	0.63	0.0	0.04	15.23	0.00	2.448	5.57	1.14	2.2	97.8	0.0	0.59	1.31	0.61	0.80	1.18	22397	1388	2	0	2	0	11287	logfile
✔	8JXW	36715	2025-05-11	2023-07-01	3.01	3.30	3.13	3.4	0.006	0.82	0.0	0.05	13.11	0.01	2.092	6.36	0.80	4.2	95.8	0.0	-0.59	0.61	0.77	3.22	3.4	0.003	0.57	0.0	0.04	14.88	0.00	2.489	3.73	2.06	3.5	96.5	0.0	0.89	0.34	0.58	0.75	2.35	8389	1108	6	0	1	0	0	logfile
✔	8JXU	36713	2025-05-22	2023-07-01	3.55	4.88	3.66	4.2	0.004	0.58	0.0	0.04	16.10	0.00	1.797	7.60	0.24	4.8	95.2	0.0	-1.05	0.63	0.77	0.89	4.2	0.005	0.68	0.0	0.04	16.22	0.00	1.765	11.72	2.32	4.4	95.6	0.0	0.35	0.81	0.62	0.80	0.61	22749	1410	2	0	3	0	11485	logfile
✔	8JXT	36712	2025-05-11	2023-07-01	3.07	3.35	3.13	3.4	0.005	0.68	0.0	0.04	12.50	0.01	2.228	7.13	0.24	5.4	94.6	0.0	-0.33	0.55	0.69	2.25	3.4	0.004	0.61	0.0	0.04	14.73	0.00	2.518	5.09	1.30	3.8	96.2	0.0	0.54	1.20	0.56	0.73	1.73	8298	1107	6	0	2	0	0	logfile
✔	8JXV	36714	2025-05-11	2023-07-01	3.21	2.43	3.23	3.3	0.007	0.83	0.0	0.05	13.11	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.3	0.003	0.63	0.0	0.04	14.89	0.00	2.541	8.20	1.69	3.9	96.1	0.0	0.54	0.35	0.70	0.69	1.16	7935	1040	6	0	1	0	0	logfile
✔	8JXX	36716	2025-05-11	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.82	0.0	0.05	13.57	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.003	0.58	0.0	0.04	14.97	0.00	2.541	4.15	1.01	3.7	96.3	0.0	1.11	0.34	0.61	0.78	1.86	8493	1103	6	0	1	0	0	logfile
✔	8JXJ	36703	2025-05-12	2023-06-30	3.9	3.45	3.79	3.5	0.004	0.82	0.0	0.05	17.72	0.01	2.143	9.75	1.79	8.1	91.9	0.0	-1.22	0.73	0.79	2.30	3.5	0.003	0.70	0.0	0.05	15.63	0.00	2.186	7.54	3.19	8.1	91.9	0.0	-1.40	0.37	0.76	0.81	2.16	9158	1140	8	0	26	0	0	logfile
✔	8JX2	36688	2025-05-29	2023-06-30	2.2	2.66	2.23	2.5	0.003	0.49	0.0	0.04	17.91	0.00	2.272	4.24	3.38	1.6	98.4	0.0	1.04	0.77	0.89	6.11	2.5	0.004	0.55	0.0	0.05	17.53	0.00	2.524	3.34	2.03	1.9	98.1	0.0	1.01	0.18	0.77	0.91	6.11	32872	4102	14	0	0	0	0	logfile
✔	8JXB	36695	2025-05-14	2023-06-30	3.7	3.47	3.63	3.5	0.005	0.78	0.0	0.05	15.62	0.01	2.126	8.21	2.98	8.0	91.9	0.1	-1.23	0.71	0.79	2.17	3.5	0.003	0.61	0.0	0.04	15.51	0.00	2.176	4.90	4.55	7.5	92.5	0.0	-1.12	0.35	0.74	0.80	2.04	10971	1374	9	0	48	0	0	logfile
✔	8JXi	36702	2025-05-14	2023-06-30	3.4	3.08	3.40	3.3	0.007	0.92	0.0	0.06	16.69	0.01	2.126	7.87	2.07	6.9	93.0	0.1	-0.57	0.71	0.79	2.33	3.3	0.004	0.68	0.0	0.05	15.81	0.00	2.116	5.10	3.97	6.1	93.8	0.1	-0.36	0.41	0.74	0.83	2.17	11506	1421	11	0	53	0	0	logfile
✔	8JXG	36700	2025-05-13	2023-06-30	3.2	3.02	3.46	3.3	0.007	0.85	0.0	0.05	19.60	0.02	2.194	7.92	2.17	7.0	92.8	0.2	-0.81	0.68	0.76	1.89	3.3	0.003	0.68	0.0	0.05	16.39	0.00	2.154	5.17	3.20	6.5	93.5	0.0	-0.55	0.35	0.70	0.81	1.53	9810	1187	11	0	58	0	0	logfile
✔	8JX3	36689	2025-05-29	2023-06-30	2.2	2.71	2.22	2.5	0.006	0.59	0.0	0.05	16.33	0.00	2.256	4.12	2.09	1.9	98.1	0.0	0.68	0.76	0.90	6.16	2.5	0.006	0.58	0.0	0.05	16.42	0.00	2.488	2.73	1.95	2.3	97.7	0.0	0.95	0.15	0.77	0.92	5.95	32826	4102	14	0	0	0	0	logfile
✔	8JX8	36692	2025-05-23	2023-06-30	3.3	3.13	3.18	3.2	0.004	0.77	0.0	0.05	15.65	0.01	2.024	5.45	1.64	5.7	94.3	0.0	-1.30	0.77	0.85	2.96	3.2	0.005	0.78	1.0	0.05	14.62	0.00	2.024	5.47	4.04	6.5	93.5	0.0	-1.45	0.30	0.81	0.88	2.79	23459	2880	32	0	100	0	0	logfile
✔	8JX9	36693	2025-05-14	2023-06-30	3.8	3.45	3.73	3.4	0.008	0.83	0.0	0.05	17.92	0.01	2.145	6.88	2.26	7.8	92.1	0.1	-1.05	0.64	0.68	1.57	3.4	0.003	0.66	0.0	0.05	15.74	0.00	2.173	5.73	2.02	7.9	92.1	0.0	-0.90	0.38	0.67	0.70	1.59	11822	1439	11	0	56	0	0	logfile
✔	8JX7	36691	2025-05-14	2023-06-30	3.6	4.97	3.68	4.2	0.003	0.65	0.0	0.04	17.21	0.00	2.057	8.94	0.00	2.3	97.7	0.0	0.20	0.63	0.77	0.93	4.2	0.003	0.86	0.0	0.05	16.83	0.00	2.522	12.06	2.79	1.8	98.2	0.0	0.77	1.30	0.63	0.84	0.90	11237	1416	1	0	0	0	0	logfile

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