Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TCG	41154	2025-05-14	2023-06-30	3.4	3.89	3.42	3.8	0.014	1.69	0.0	0.08	12.48	0.01	1.790	0.34	0.16	3.5	96.5	0.0	0.10	0.76	0.73	2.15	3.8	0.003	0.84	0.0	0.04	14.53	0.00	1.889	4.54	1.11	5.1	94.9	0.0	-0.49	2.20	0.78	0.78	2.77	11597	754	6	0	13	0	5652	logfile
✔	8JXJ	36703	2025-05-12	2023-06-30	3.9	3.45	3.79	3.5	0.004	0.82	0.0	0.05	17.72	0.01	2.143	9.75	1.79	8.1	91.9	0.0	-1.22	0.73	0.79	2.30	3.5	0.003	0.70	0.0	0.05	15.63	0.00	2.186	7.54	3.19	8.1	91.9	0.0	-1.40	0.37	0.76	0.81	2.16	9158	1140	8	0	26	0	0	logfile
✔	8JX9	36693	2025-05-14	2023-06-30	3.8	3.45	3.73	3.4	0.008	0.83	0.0	0.05	17.92	0.01	2.145	6.88	2.26	7.8	92.1	0.1	-1.05	0.64	0.68	1.57	3.4	0.003	0.66	0.0	0.05	15.74	0.00	2.173	5.73	2.02	7.9	92.1	0.0	-0.90	0.38	0.67	0.70	1.59	11822	1439	11	0	56	0	0	logfile
✔	8JX3	36689	2025-05-29	2023-06-30	2.2	2.71	2.22	2.5	0.006	0.59	0.0	0.05	16.33	0.00	2.256	4.12	2.09	1.9	98.1	0.0	0.68	0.76	0.90	6.16	2.5	0.006	0.58	0.0	0.05	16.42	0.00	2.488	2.73	1.95	2.3	97.7	0.0	0.95	0.15	0.77	0.92	5.95	32826	4102	14	0	0	0	0	logfile
✔	8JXG	36700	2025-05-13	2023-06-30	3.2	3.02	3.46	3.3	0.007	0.85	0.0	0.05	19.60	0.02	2.194	7.92	2.17	7.0	92.8	0.2	-0.81	0.68	0.76	1.89	3.3	0.003	0.68	0.0	0.05	16.39	0.00	2.154	5.17	3.20	6.5	93.5	0.0	-0.55	0.35	0.70	0.81	1.53	9810	1187	11	0	58	0	0	logfile
✔	8JX8	36692	2025-05-23	2023-06-30	3.3	3.13	3.18	3.2	0.004	0.77	0.0	0.05	15.65	0.01	2.024	5.45	1.64	5.7	94.3	0.0	-1.30	0.77	0.85	2.96	3.2	0.005	0.78	1.0	0.05	14.62	0.00	2.024	5.47	4.04	6.5	93.5	0.0	-1.45	0.30	0.81	0.88	2.79	23459	2880	32	0	100	0	0	logfile
✔	8JXH	36701	2025-05-14	2023-06-30	3.5	3.14	3.38	3.3	0.007	0.89	0.0	0.05	16.88	0.01	2.130	7.78	2.62	6.6	93.4	0.1	-1.08	0.72	0.80	2.13	3.3	0.003	0.67	0.0	0.05	15.81	0.00	2.204	5.32	3.25	5.2	94.8	0.0	-0.69	1.46	0.74	0.81	1.89	11503	1423	11	0	51	0	0	logfile
✔	8JWH	36683	2025-05-10	2023-06-29	3.34	2.70	3.23	3.4	0.004	0.84	0.0	0.05	19.18	0.01	2.135	16.08	0.76	4.7	95.3	0.0	-0.43	0.74	0.77	1.81	3.4	0.003	0.69	0.0	0.04	19.40	0.01	2.583	12.40	2.85	4.0	96.0	0.0	0.59	0.94	0.73	0.75	1.42	4870	597	1	0	0	0	0	logfile
✔	8PN2	17768	2025-05-19	2023-06-29	2.63	2.88	2.71	2.9	0.003	0.52	0.0	0.04	15.38	0.00	1.969	10.76	0.05	3.9	96.1	0.0	-0.18	0.68	0.83	3.76	2.9	0.006	0.99	4.0	0.05	17.30	0.01	1.945	8.93	2.85	4.6	95.3	0.1	-0.21	0.37	0.66	0.83	3.29	18498	2370	12	0	12	0	0	logfile
✔	8TBY	41148	2025-05-21	2023-06-29	4.4	6.50	4.41	4.5	0.002	0.56	0.0	0.04	14.36	0.00	2.261	11.05	0.00	3.0	97.0	0.0	1.99	0.83	0.83	—	4.5	0.002	0.60	0.0	0.04	14.35	0.00	2.400	11.33	0.00	3.1	96.9	0.0	2.03	0.61	0.84	0.86	—	21126	2618	7	0	0	0	0	logfile
✔	8JWi	36684	2025-05-13	2023-06-29	2.94	3.38	3.21	3.4	0.005	0.81	0.0	0.04	9.61	0.00	2.035	1.42	0.00	6.7	93.3	0.0	-3.73	0.65	0.78	2.96	3.4	0.003	0.59	0.0	0.04	14.51	0.00	1.940	2.78	2.29	6.7	93.3	0.0	-0.19	0.61	0.66	0.82	2.00	9431	1164	2	0	4	0	0	logfile
✔	8JWG	36682	2025-05-13	2023-06-29	3.54	4.16	3.72	4.0	0.005	0.72	0.0	0.04	9.43	0.00	2.223	2.05	0.00	7.9	92.1	0.0	-3.71	0.68	0.71	1.76	4.0	0.003	0.68	0.0	0.04	14.47	0.00	2.474	8.26	1.96	6.7	93.3	0.0	-0.71	0.95	0.69	0.75	1.09	9620	1192	2	0	1	0	0	logfile
✔	8TC3	41151	2025-05-09	2023-06-29	2.57	2.79	2.58	2.8	0.003	0.52	0.0	0.04	18.01	0.00	2.266	7.50	0.46	0.9	99.1	0.0	0.50	0.72	0.88	5.45	2.8	0.004	0.57	0.0	0.04	18.29	0.00	2.624	7.38	2.52	1.9	98.1	0.0	0.69	0.67	0.67	0.86	4.99	4129	542	5	0	1	17	0	logfile
✔	8JWF	36681	2025-05-13	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.65	0.0	0.04	14.03	0.00	2.514	7.41	1.93	5.6	94.4	0.0	0.39	2.34	0.71	0.76	0.77	9717	1204	2	0	1	0	0	logfile
✔	8PMQ	17764	2025-05-11	2023-06-29	3.53	3.56	3.44	3.6	0.005	0.75	0.0	0.05	14.38	0.01	2.266	6.53	0.50	5.9	94.1	0.0	0.65	0.78	0.84	1.96	3.6	0.003	0.58	0.0	0.04	15.91	0.00	1.106	5.74	2.77	4.7	95.3	0.0	1.46	1.46	0.77	0.84	1.38	7746	1007	6	0	2	0	0	logfile
✔	8PM6	17758	2025-05-11	2023-06-28	3.22	3.42	3.02	3.4	0.005	0.80	1.0	0.05	18.41	0.01	2.200	14.16	0.42	4.8	95.2	0.0	0.94	0.49	0.75	1.34	3.4	0.004	0.60	0.0	0.04	16.50	0.00	2.546	7.64	3.91	5.0	95.0	0.0	1.58	1.71	0.57	0.81	1.35	7029	872	2	0	9	0	0	logfile
✔	8JVA	36672	2025-05-10	2023-06-28	2.81	3.69	2.86	3.4	0.004	0.64	0.0	0.04	12.61	0.00	2.217	5.62	0.00	4.6	95.4	0.0	-0.47	0.84	0.82	3.94	3.4	0.003	0.72	0.0	0.04	15.09	0.00	2.511	7.46	1.65	2.8	97.2	0.0	-0.07	0.92	0.84	0.85	3.63	6071	769	5	0	5	0	0	logfile
✔	8TB9	41146	2025-05-27	2023-06-28	4.0	5.84	4.07	3.9	0.004	1.40	0.0	0.11	24.50	0.00	2.104	25.06	0.25	5.3	94.6	0.1	-0.99	0.90	0.82	—	3.9	0.004	0.70	0.0	0.04	25.25	0.00	1.962	20.75	2.71	6.1	93.7	0.1	-0.78	1.08	0.90	0.83	—	30224	2789	18	386	1	0	0	logfile
✔	8JWE	36680	2025-05-16	2023-06-28	2.74	2.66	2.57	2.7	0.046	2.12	0.0	0.15	13.17	0.01	1.322	4.95	0.00	6.2	93.5	0.4	-4.49	0.67	0.84	4.70	2.7	0.005	0.70	0.0	0.05	16.05	0.00	2.546	4.57	1.51	2.9	97.1	0.0	0.02	1.13	0.70	0.87	4.15	14861	1967	7	0	0	0	0	logfile
✔	8JVJ	36676	2025-05-26	2023-06-28	3.44	3.68	3.52	3.7	0.010	0.75	0.0	0.04	14.74	0.00	2.084	9.90	0.39	3.8	96.2	0.0	0.68	0.64	0.76	1.74	3.7	0.003	0.69	0.0	0.04	16.37	0.00	2.503	9.53	2.05	4.0	96.0	0.0	0.75	0.47	0.62	0.77	1.37	25052	3208	12	0	4	0	0	logfile

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