Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LU9	63392	2025-05-13	2025-02-08	3.3	3.70	3.51	3.7	0.009	1.43	3.0	0.15	19.98	0.03	2.265	8.31	11.48	1.7	98.3	0.0	-0.36	0.66	0.88	2.21	3.7	0.003	0.59	0.0	0.04	17.72	0.00	2.453	5.67	2.87	1.6	98.4	0.0	3.51	0.79	0.65	0.86	1.63	9858	1281	8	0	1	0	0	logfile
✔	9LUB	63393	2025-05-13	2025-02-08	3.3	3.69	3.45	3.7	0.009	1.41	3.0	0.09	17.48	0.03	2.121	9.42	10.75	2.1	97.9	0.0	-0.89	0.67	0.89	2.09	3.7	0.003	0.61	0.0	0.04	16.90	0.00	2.595	5.68	2.87	1.5	98.5	0.0	3.34	1.44	0.65	0.86	1.57	10113	1326	7	0	0	0	0	logfile
✔	9LUC	63394	2025-05-12	2025-02-08	3.5	3.84	3.62	3.9	0.010	1.49	2.0	0.09	17.83	0.03	2.239	8.46	11.92	2.6	97.3	0.1	-1.36	0.67	0.89	2.13	3.9	0.003	0.63	0.0	0.04	17.63	0.00	2.505	5.49	2.91	1.6	98.3	0.1	3.17	0.82	0.64	0.85	1.22	9584	1249	7	0	0	0	0	logfile
✔	9N6C	49056	2025-05-18	2025-02-05	2.99	3.76	3.09	3.4	0.002	0.51	0.0	0.04	20.20	0.00	2.540	2.69	1.81	5.1	94.8	0.1	0.20	0.89	0.85	2.79	3.4	0.002	0.52	0.0	0.04	20.37	0.00	2.523	3.65	2.46	5.4	94.4	0.1	1.40	1.00	0.88	0.85	2.20	17296	2034	10	114	3	0	0	logfile
✔	9i8i	52724	2025-05-13	2025-02-05	2.75	2.58	2.76	2.5	0.003	0.94	0.0	0.05	18.88	0.01	2.054	12.11	2.32	5.5	94.5	0.0	0.11	0.75	0.75	1.06	2.7	0.003	0.82	0.0	0.04	19.68	0.01	2.529	9.31	4.99	5.4	94.6	0.0	0.48	0.66	0.76	0.77	1.04	10374	1338	6	0	0	0	0	logfile
✔	9N69	49053	2025-05-20	2025-02-05	3.13	3.96	3.20	3.5	0.003	0.47	0.0	0.04	19.19	0.00	2.495	2.98	2.08	3.7	96.3	0.0	0.92	0.89	0.85	2.75	3.5	0.003	0.50	0.0	0.04	19.49	0.00	2.517	3.19	1.43	3.7	96.2	0.1	2.03	1.34	0.90	0.86	2.46	20413	2445	12	114	4	0	0	logfile
✔	9N71	49081	2025-05-14	2025-02-05	3.2	3.36	3.02	3.4	0.005	0.72	0.0	0.05	15.89	0.00	2.287	4.53	0.48	2.3	97.7	0.0	-0.53	0.70	0.90	4.69	3.4	0.002	0.49	0.0	0.04	16.16	0.00	2.534	2.65	2.48	2.0	98.0	0.0	-0.20	1.58	0.70	0.91	4.90	11778	1584	6	0	0	0	0	logfile
✔	9N6B	49055	2025-05-20	2025-02-05	3.09	3.90	3.16	3.5	0.004	0.61	0.0	0.04	19.43	0.00	2.204	3.22	1.88	4.3	95.7	0.0	0.27	0.89	0.85	3.17	3.5	0.003	0.52	0.0	0.04	19.88	0.00	2.439	3.01	2.06	4.9	95.0	0.0	1.66	0.97	0.89	0.86	2.61	20486	2442	12	114	4	0	0	logfile
✔	9LSJ	63357	2025-05-17	2025-02-04	3.1	4.05	3.34	3.7	0.006	0.81	0.0	0.05	15.93	0.00	2.205	10.55	0.12	4.9	95.1	0.0	-0.69	0.80	0.83	3.29	3.7	0.002	0.61	0.0	0.04	14.84	0.00	2.511	8.68	0.91	3.6	96.4	0.0	0.15	1.11	0.79	0.83	2.63	15438	1989	11	0	15	0	0	logfile
✔	9LSK	63358	2025-05-10	2025-02-04	2.9	3.78	3.03	3.6	0.004	0.68	1.0	0.05	11.95	0.00	2.185	9.35	0.31	2.1	97.9	0.0	1.52	0.69	0.88	2.76	3.6	0.003	0.59	0.0	0.04	14.47	0.00	2.613	7.53	2.45	2.1	97.9	0.0	2.20	0.39	0.66	0.87	1.86	6422	858	4	0	3	0	0	logfile
✔	9i81	52704	2025-05-18	2025-02-04	2.98	2.88	2.84	2.9	0.005	0.71	0.0	0.24	14.90	0.01	1.903	8.12	0.00	3.8	96.2	0.0	0.09	0.79	0.83	4.04	2.9	0.003	0.53	0.0	0.04	14.67	0.00	2.299	5.28	1.16	3.7	96.3	0.0	0.91	0.49	0.79	0.85	3.73	17157	1086	5	0	3	0	8410	logfile
✔	9N5V	49040	2025-05-15	2025-02-04	2.76	2.50	2.97	1.4	0.014	1.09	0.0	0.04	12.02	0.00	2.215	6.33	4.24	3.9	96.1	0.0	-0.64	0.91	0.84	3.65	1.3	0.005	1.18	0.0	0.05	14.94	0.01	2.443	11.09	2.31	4.3	95.7	0.0	-0.56	0.61	0.93	0.88	3.12	12711	1601	5	0	14	0	0	logfile
✔	9i86	52708	2025-05-15	2025-02-04	2.75	3.05	2.76	3.0	0.007	0.61	0.0	0.05	15.98	0.00	2.055	6.53	0.00	2.3	97.7	0.0	-0.09	0.49	0.73	3.78	3.0	0.003	0.66	0.0	0.05	20.68	0.00	2.338	2.79	1.89	0.9	99.1	0.0	0.45	1.21	0.55	0.80	3.99	13618	810	8	40	0	0	6728	logfile
✔	9LSH	63355	2025-05-17	2025-02-04	3.8	4.98	3.99	4.1	0.006	0.89	0.0	0.06	12.57	0.00	2.234	11.72	0.91	4.2	95.8	0.0	-0.67	0.81	0.81	1.37	4.1	0.003	0.70	0.0	0.04	13.80	0.00	2.496	11.26	1.40	4.3	95.7	0.0	-0.04	0.45	0.82	0.85	1.05	15343	1981	11	0	14	0	0	logfile
✔	9LSi	63356	2025-05-17	2025-02-04	3.3	4.25	3.59	3.8	0.006	0.83	0.0	0.06	14.35	0.00	2.212	8.03	0.54	4.7	95.2	0.1	-1.17	0.83	0.87	2.29	3.8	0.002	0.58	0.0	0.04	14.00	0.00	2.592	4.87	0.91	3.6	96.4	0.0	-0.04	0.37	0.82	0.87	1.94	15433	1986	11	0	16	0	0	logfile
✔	9N5U	49039	2025-05-15	2025-02-04	2.85	2.43	2.89	1.3	0.005	0.97	0.0	0.05	11.62	0.01	2.196	5.08	2.47	3.4	96.6	0.0	-0.70	0.92	0.87	4.26	1.4	0.009	0.89	0.0	0.04	15.04	0.00	2.500	7.06	1.83	2.6	97.4	0.0	-0.02	0.52	0.94	0.90	3.27	13355	1692	6	0	14	0	0	logfile
✔	9LRR	63340	2025-05-17	2025-02-01	2.68	2.89	2.69	2.9	0.003	0.82	0.0	0.04	14.41	0.01	1.995	2.41	0.06	2.5	97.5	0.0	1.07	0.36	0.61	3.94	2.9	0.002	0.54	0.0	0.04	15.74	0.00	2.450	3.40	1.72	2.1	97.9	0.0	0.83	0.41	0.69	0.88	3.68	15134	1921	15	0	12	36	0	logfile
✔	9i65	52650	2025-05-11	2025-01-29	4.1	4.36	3.98	4.4	0.003	0.66	0.0	0.05	11.38	0.00	2.162	11.35	0.00	11.3	88.2	0.5	-1.25	0.69	0.75	—	4.4	0.004	0.75	0.0	0.05	11.54	0.00	2.435	8.60	0.00	12.4	87.2	0.4	-1.06	1.48	0.73	0.77	—	8433	1215	9	0	0	0	0	logfile
✔	9N1Y	48824	2025-05-20	2025-01-27	3.23	4.00	3.37	3.8	0.003	0.56	0.0	0.04	14.54	0.00	2.268	3.23	1.17	3.9	96.0	0.1	1.41	0.66	0.81	1.46	3.8	0.003	0.50	0.0	0.04	15.31	0.00	2.444	3.44	1.07	3.9	96.0	0.1	1.89	0.36	0.67	0.81	1.10	19216	1230	1	0	0	0	9645	logfile
✔	9N0X	48797	2025-05-10	2025-01-24	3.3	3.55	3.37	3.6	0.008	0.96	0.0	0.04	23.18	0.01	2.210	8.45	0.29	4.0	96.0	0.0	1.18	0.64	0.77	1.69	3.6	0.002	0.50	0.0	0.04	19.34	0.00	2.463	4.53	3.05	3.3	96.7	0.0	1.74	0.80	0.63	0.77	1.30	6588	760	4	0	8	0	0	logfile

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