Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MZU	48769	2025-05-19	2025-01-23	2.4	3.21	2.49	2.9	0.003	0.53	0.0	0.04	17.08	0.00	2.048	12.02	2.00	3.2	96.7	0.1	0.29	0.75	0.89	4.12	2.9	0.003	0.72	1.0	0.04	16.51	0.00	2.096	13.98	1.41	3.3	96.7	0.0	1.05	0.43	0.70	0.89	3.84	17517	2094	21	0	39	3	6	logfile
✔	9LoN	63250	2025-05-09	2025-01-23	3.0	2.99	2.19	3.1	0.009	0.65	0.0	0.05	13.10	0.00	2.359	2.29	0.00	4.7	95.3	0.0	-3.50	0.45	0.92	6.73	3.1	0.004	0.46	0.0	0.05	15.09	0.00	2.622	1.06	1.39	2.9	97.1	0.0	-1.41	0.89	0.44	0.92	6.63	2772	396	6	0	0	0	0	logfile
✔	9LKY	63188	2025-05-28	2025-01-17	3.93	4.25	4.04	4.1	0.004	0.60	0.0	0.04	15.03	0.00	1.998	7.88	0.00	5.6	94.4	0.0	-0.51	0.79	0.80	1.15	4.1	0.003	0.71	0.0	0.04	16.92	0.00	1.987	12.65	2.21	5.3	94.7	0.0	0.68	0.81	0.80	0.83	1.41	26308	3277	13	0	6	0	0	logfile
✔	9LLD	63198	2025-05-18	2025-01-17	3.6	4.83	3.56	3.6	0.003	0.56	0.0	0.04	14.89	0.00	2.221	8.69	0.07	6.3	93.7	0.0	-0.60	0.86	0.61	1.72	3.7	0.003	0.56	0.0	0.04	15.06	0.00	2.592	5.82	3.01	6.5	93.5	0.0	-0.95	1.82	0.89	0.87	1.94	16287	2334	9	0	0	0	0	logfile
✔	9MX3	48708	2025-05-10	2025-01-17	3.0	3.93	3.03	3.5	0.003	0.63	0.0	0.04	17.07	0.00	2.208	6.38	1.68	3.8	96.2	0.0	1.64	0.86	0.83	1.60	3.5	0.002	0.62	0.0	0.04	17.28	0.00	2.225	4.83	2.52	3.6	96.4	0.0	2.10	0.34	0.86	0.83	1.36	5929	641	4	33	1	0	0	logfile
✔	9MW8	48697	2025-05-10	2025-01-17	3.3	4.53	3.31	4.0	0.002	0.63	0.0	0.04	18.27	0.00	2.077	13.98	1.33	3.3	96.6	0.2	1.50	0.85	0.75	0.46	4.0	0.003	0.69	0.0	0.04	18.46	0.00	2.479	12.93	2.17	3.4	96.3	0.3	1.47	0.96	0.86	0.77	-0.06	6419	647	4	54	2	0	0	logfile
✔	9MW6	48678	2025-05-10	2025-01-16	3.4	4.48	3.46	4.2	0.004	0.62	0.0	0.04	17.58	0.00	2.098	12.23	2.43	6.4	93.6	0.0	-0.15	0.78	0.78	1.20	4.1	0.002	0.62	0.0	0.04	17.84	0.00	2.554	8.22	2.03	6.2	93.8	0.0	0.12	0.94	0.78	0.78	1.35	5473	535	3	54	0	0	0	logfile
✔	9LKX	63187	2025-05-10	2025-01-16	3.76	3.91	3.78	3.8	0.003	0.64	0.0	0.04	14.63	0.01	2.286	7.56	0.18	7.3	92.7	0.0	-0.75	0.70	0.76	1.03	3.8	0.004	0.67	0.0	0.04	17.08	0.00	2.369	12.27	3.24	7.4	92.6	0.0	0.58	1.09	0.71	0.78	1.12	5105	650	2	0	0	0	0	logfile
✔	9MW7	48691	2025-05-10	2025-01-16	3.4	4.43	3.48	3.9	0.008	0.62	0.0	0.04	18.41	0.00	2.138	15.61	1.01	9.2	90.6	0.2	-1.07	0.83	0.66	0.86	3.9	0.003	0.68	0.0	0.04	18.74	0.00	2.058	16.94	1.83	10.5	89.1	0.4	-1.53	0.98	0.84	0.68	0.90	5504	535	4	54	2	0	0	logfile
✔	9LiU	63123	2025-05-20	2025-01-14	2.7	3.43	3.04	3.2	0.014	0.89	0.0	0.05	24.81	0.01	2.011	14.07	3.71	6.0	94.0	0.0	-0.19	0.88	0.85	2.85	3.2	0.004	0.62	0.0	0.04	24.64	0.00	1.934	8.15	2.13	4.7	95.3	0.0	1.10	1.17	0.86	0.83	1.95	19587	1678	14	292	4	0	0	logfile
✔	9LJ2	63131	2025-05-21	2025-01-14	2.98	3.63	3.05	3.3	0.005	0.73	0.0	0.04	24.54	0.00	2.044	15.37	0.18	8.0	92.0	0.0	-0.69	0.87	0.84	1.94	3.3	0.003	0.67	0.0	0.04	25.12	0.00	2.044	11.76	1.97	6.6	93.4	0.0	0.29	0.44	0.87	0.85	1.23	21131	1861	14	294	4	0	0	logfile
✔	9MUo	48639	2025-05-11	2025-01-14	3.3	3.88	3.31	3.7	0.005	0.81	0.0	0.05	17.64	0.01	2.216	14.39	1.45	5.3	94.3	0.4	-0.28	0.61	0.85	1.70	3.7	0.003	0.70	0.0	0.05	17.71	0.00	2.407	13.61	3.79	4.7	95.3	0.0	0.44	1.04	0.62	0.87	2.01	8410	1012	7	8	1	0	0	logfile
✔	9HZE	52523	2025-05-17	2025-01-13	3.23	4.07	3.26	3.7	0.002	0.42	0.0	0.04	12.45	0.00	2.430	5.07	0.00	3.2	96.8	0.0	0.52	0.81	0.82	3.79	3.7	0.004	0.50	0.0	0.05	12.31	0.00	2.548	3.42	0.89	0.0	100.0	0.0	1.88	0.44	0.91	0.92	4.57	16152	2280	24	0	0	0	0	logfile
✔	9MUE	48630	2025-05-11	2025-01-13	4.0	4.21	3.13	4.2	0.005	0.81	0.0	0.05	18.80	0.01	2.101	15.54	1.00	4.9	94.5	0.6	0.03	0.66	0.86	—	4.2	0.003	0.67	0.0	0.04	18.34	0.01	2.523	12.09	2.67	6.0	94.0	0.0	-0.09	0.92	0.67	0.87	—	8438	1012	8	8	2	0	0	logfile
✔	9MU4	48619	2025-05-15	2025-01-13	3.29	3.84	3.34	3.5	0.006	0.84	0.0	0.05	28.80	0.01	2.302	2.50	0.00	3.7	96.3	0.0	-1.86	0.90	0.86	2.88	3.5	0.004	0.61	0.0	0.03	29.07	0.00	2.463	8.41	2.23	4.4	95.6	0.0	2.25	1.22	0.91	0.88	2.08	12794	770	10	328	0	0	0	logfile
✔	9MU3	48618	2025-05-26	2025-01-13	3.14	3.36	3.22	3.3	0.006	0.99	0.0	0.06	13.62	0.01	2.412	0.07	0.00	3.1	96.9	0.0	-0.46	0.76	0.87	3.70	3.3	0.003	0.57	0.0	0.04	17.43	0.00	2.523	4.62	3.01	1.3	98.7	0.0	0.67	1.50	0.75	0.87	3.25	28932	3558	36	0	0	0	0	logfile
✔	9MTY	48616	2025-05-10	2025-01-12	3.05	2.52	2.94	2.9	0.009	1.16	0.0	0.08	21.34	0.01	2.052	2.43	0.39	2.4	97.2	0.3	-0.43	0.62	0.73	3.83	2.9	0.005	0.65	0.0	0.04	23.18	0.00	2.180	7.14	2.15	2.4	97.6	0.0	2.46	1.50	0.63	0.76	3.38	7106	586	9	112	4	0	0	logfile
✔	9LGM	63068	2025-05-11	2025-01-10	2.84	2.19	2.85	1.9	0.004	0.61	0.0	0.04	16.71	0.00	2.028	13.12	0.24	2.9	97.1	0.0	0.64	0.80	0.81	3.05	1.9	0.005	0.62	0.0	0.04	17.34	0.00	2.436	9.44	4.40	3.7	96.3	0.0	0.79	1.09	0.79	0.81	2.74	8061	1049	5	0	0	0	0	logfile
✔	9LGW	63074	2025-05-13	2025-01-10	2.7	2.88	2.71	2.9	0.004	0.59	0.0	0.05	14.83	0.00	2.279	4.69	1.62	5.2	94.8	0.0	-1.08	0.59	0.70	2.61	2.9	0.004	0.58	0.0	0.05	15.73	0.00	2.226	4.88	1.99	6.2	93.8	0.0	-0.91	0.40	0.60	0.71	2.55	10043	603	2	0	0	0	5083	logfile
✔	9MS8	48568	2025-05-12	2025-01-09	3.73	4.13	3.84	4.0	0.003	0.75	0.0	0.04	16.24	0.00	2.522	7.79	1.12	8.0	92.0	0.0	-0.91	0.65	0.82	2.19	4.0	0.003	0.72	0.0	0.04	16.99	0.00	2.454	8.60	4.67	7.4	92.6	0.0	-0.07	0.96	0.65	0.81	1.87	9290	1189	3	0	0	0	0	logfile

• ← previous
• Page 3 of 642
• next →