Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CQR	45820	2025-05-10	2024-07-19	2.7	2.92	2.70	3.0	0.006	0.84	0.0	0.05	16.04	0.01	2.258	5.29	2.64	1.4	98.6	0.0	3.05	0.66	0.83	4.35	3.0	0.004	0.60	0.0	0.04	16.69	0.01	2.610	4.50	2.64	1.8	98.2	0.0	2.67	0.26	0.65	0.83	4.28	4470	566	8	0	4	0	0	logfile
✔	9CQo	45817	2025-05-10	2024-07-19	3.01	3.27	3.01	3.3	0.007	0.84	0.0	0.05	15.65	0.01	2.218	5.63	2.86	1.1	98.9	0.0	3.00	0.69	0.84	3.03	3.3	0.004	0.59	0.0	0.04	15.49	0.01	2.562	3.04	3.08	1.6	98.4	0.0	2.98	0.82	0.70	0.84	3.35	4470	566	8	0	4	0	0	logfile
✔	9CQP	45818	2025-05-10	2024-07-19	2.78	3.06	2.79	3.1	0.006	0.87	0.0	0.05	15.27	0.01	2.236	6.98	2.86	0.7	99.3	0.0	2.75	0.66	0.82	3.63	3.1	0.006	0.65	0.0	0.04	15.88	0.01	2.502	6.19	1.54	1.1	98.9	0.0	2.33	0.83	0.67	0.83	3.47	4470	566	8	0	4	0	0	logfile
✔	9CQ1	45806	2025-05-15	2024-07-19	4.3	4.57	4.31	4.3	0.012	1.49	0.0	0.08	10.94	0.01	1.910	4.48	0.43	1.8	98.1	0.1	-0.12	0.71	0.54	—	4.3	0.004	0.78	0.0	0.05	12.58	0.01	2.347	18.70	0.00	3.7	96.3	0.0	0.25	1.42	0.78	0.76	—	12940	1694	2	0	0	0	0	logfile
✔	9CQW	45825	2025-05-10	2024-07-19	2.61	2.85	2.62	2.9	0.006	0.87	0.0	0.06	17.31	0.01	2.158	5.85	5.51	0.5	99.5	0.0	2.83	0.68	0.85	2.82	2.9	0.004	0.59	0.0	0.04	17.42	0.01	2.577	5.18	2.42	0.5	99.5	0.0	3.21	0.25	0.70	0.86	2.54	4470	566	8	0	4	0	0	logfile
✔	9G6V	51105	2025-05-21	2024-07-19	2.9	3.36	3.12	3.3	0.003	0.44	0.0	0.04	8.59	0.00	2.254	5.44	0.68	4.7	95.3	0.0	-0.91	0.73	0.81	3.64	3.3	0.003	0.55	0.0	0.04	13.76	0.00	2.299	6.29	2.38	5.2	94.8	0.0	-1.40	0.57	0.67	0.78	3.20	21815	2760	20	0	0	0	0	logfile
✔	9CQV	45824	2025-05-10	2024-07-19	2.75	3.01	2.78	3.1	0.006	0.79	0.0	0.05	16.70	0.01	2.206	5.29	3.08	0.5	99.5	0.0	2.90	0.69	0.85	3.44	3.0	0.004	0.62	0.0	0.04	16.45	0.01	2.570	4.61	2.42	0.7	99.3	0.0	3.09	0.34	0.70	0.86	3.42	4470	566	8	0	4	0	0	logfile
✔	9CPo	45805	2025-05-23	2024-07-18	3.5	3.83	3.56	3.9	0.003	0.49	0.0	0.04	15.92	0.00	2.159	4.11	0.00	4.7	95.3	0.0	0.08	0.66	0.77	2.63	3.9	0.003	0.49	0.0	0.04	16.01	0.00	2.387	3.03	1.62	4.3	95.7	0.0	0.31	0.26	0.69	0.79	2.18	24089	1392	7	63	2	0	11624	logfile
✔	9G69	51096	2025-05-10	2024-07-18	4.84	4.50	4.72	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.007	1.14	0.0	0.05	10.65	0.01	2.337	12.27	0.00	28.1	71.6	0.3	-5.07	1.20	0.73	0.75	—	5053	1028	5	0	1	0	0	logfile
✔	9iSV	60850	2025-05-11	2024-07-18	3.07	3.27	3.12	3.2	0.002	0.64	0.0	0.04	25.32	0.00	2.229	0.97	0.00	0.0	0.0	0.0	—	0.63	0.55	—	3.2	0.006	0.86	0.0	0.05	25.24	0.01	1.841	13.88	0.00	0.0	0.0	0.0	—	0.79	0.65	0.59	—	7537	0	1	351	0	0	0	logfile
✔	9G5i	51087	2025-05-10	2024-07-17	3.2	3.11	3.08	3.7	0.010	1.03	0.0	0.07	13.94	0.01	2.262	9.85	0.00	4.7	95.3	0.0	-1.90	0.71	0.76	2.10	3.7	0.003	0.63	0.0	0.05	15.40	0.00	2.498	11.33	2.66	5.4	94.6	0.0	-1.20	0.90	0.72	0.76	1.94	5252	732	3	0	0	0	0	logfile
✔	9CP5	45800	2025-05-11	2024-07-17	3.51	3.94	3.57	3.9	0.003	0.73	0.0	0.05	14.36	0.00	2.238	5.44	0.00	6.2	93.8	0.0	-1.74	0.63	0.74	1.80	3.9	0.004	0.69	0.0	0.04	16.37	0.00	2.473	9.72	2.35	6.5	93.5	0.0	-0.11	1.51	0.65	0.77	1.59	7450	966	4	0	1	0	0	logfile
✔	9Coo	45787	2025-05-11	2024-07-17	3.73	4.04	3.70	3.9	0.003	0.68	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.004	0.73	0.0	0.04	16.98	0.00	2.241	11.11	6.87	7.8	92.2	0.0	-2.11	1.70	0.79	0.75	0.68	7493	1028	8	0	6	0	0	logfile
✔	9G5K	51088	2025-05-09	2024-07-17	2.87	2.98	2.84	2.9	0.004	0.62	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.65	0.0	0.04	16.38	0.00	2.489	5.46	3.29	3.2	96.8	0.0	2.08	0.91	0.63	0.84	2.66	4040	507	3	0	1	0	0	logfile
✔	9iS7	60833	2025-05-16	2024-07-17	2.87	3.10	3.00	3.0	0.003	0.61	0.0	0.05	25.49	0.00	2.059	1.40	0.00	0.0	0.0	0.0	—	0.78	0.77	—	3.0	0.007	0.74	0.0	0.04	25.35	0.01	1.849	4.90	0.00	0.0	0.0	0.0	—	1.15	0.83	0.84	—	15216	0	4	705	33	0	0	logfile
✔	9iSi	60836	2025-05-09	2024-07-17	3.56	3.80	3.46	3.7	0.005	0.67	0.0	0.04	14.08	0.00	2.397	9.20	0.00	2.5	97.5	0.0	1.49	0.50	0.67	1.52	3.8	0.004	0.64	0.0	0.04	15.51	0.00	2.637	6.96	4.50	3.3	96.7	0.0	2.29	1.54	0.53	0.77	1.36	1955	252	1	0	0	0	0	logfile
✔	9iRX	60824	2025-05-09	2024-07-16	3.0	3.17	2.77	3.2	0.009	0.58	0.0	0.03	11.28	0.00	2.197	7.04	0.56	2.4	97.6	0.0	2.29	0.65	0.82	3.59	3.2	0.003	0.66	0.0	0.04	15.02	0.00	2.642	8.17	2.22	1.5	98.5	0.0	2.26	0.36	0.61	0.82	2.77	3509	469	2	0	1	0	0	logfile
✔	9Co6	45771	2025-05-26	2024-07-16	3.01	3.57	3.05	3.4	0.004	0.87	0.0	0.06	12.95	0.01	1.961	4.49	0.03	5.4	94.4	0.2	-1.26	0.81	0.81	2.45	3.4	0.005	0.77	1.0	0.05	14.01	0.00	2.258	5.88	0.94	5.1	94.7	0.1	-0.38	0.46	0.81	0.87	2.41	28149	3546	17	0	36	0	0	logfile
✔	9Co7	45772	2025-05-10	2024-07-16	3.32	4.05	3.32	3.9	0.005	1.08	0.0	0.06	13.46	0.01	2.215	5.41	0.18	8.4	90.9	0.8	-2.76	0.74	0.82	2.87	3.8	0.005	0.88	0.0	0.05	15.40	0.01	2.460	10.42	1.96	9.4	90.1	0.5	-1.86	1.39	0.75	0.85	3.34	5220	666	4	0	0	0	0	logfile
✔	9iRW	60823	2025-05-09	2024-07-16	3.26	3.49	3.17	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.66	0.0	0.04	14.50	0.00	2.500	8.40	4.96	4.9	95.1	0.0	-0.63	0.29	0.61	0.82	2.37	3808	499	2	0	1	0	0	logfile

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