Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9Co9	45774	2025-05-10	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.003	0.78	0.0	0.05	15.60	0.00	2.398	8.91	2.86	5.1	94.6	0.3	-1.35	2.39	0.76	0.83	2.66	5198	661	4	0	0	0	0	logfile
✔	9CoD	45776	2025-05-14	2024-07-16	4.7	4.64	4.83	4.3	0.004	1.08	0.0	0.04	13.74	0.00	2.175	20.80	0.00	24.3	71.8	3.9	-4.85	0.84	0.75	—	4.4	0.003	0.91	0.0	0.05	14.24	0.00	2.529	14.30	0.00	24.2	70.9	4.9	-4.87	1.27	0.84	0.76	—	12405	1575	15	0	0	0	0	logfile
✔	9iRW	60823	2025-05-09	2024-07-16	3.26	3.49	3.17	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.66	0.0	0.04	14.50	0.00	2.500	8.40	4.96	4.9	95.1	0.0	-0.63	0.29	0.61	0.82	2.37	3808	499	2	0	1	0	0	logfile
✔	9CMH	45748	2025-05-09	2024-07-15	4.0	4.53	4.01	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.84	0.0	0.04	15.66	0.00	2.529	22.08	3.84	5.2	94.8	0.0	-0.98	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	9Co0	45768	2025-05-13	2024-07-15	3.3	3.32	3.26	3.2	0.004	0.69	0.0	0.05	13.26	0.01	2.219	4.93	0.00	2.4	97.6	0.0	0.21	0.74	0.80	3.04	3.2	0.003	0.62	0.0	0.04	15.56	0.00	2.513	7.87	2.19	3.2	96.8	0.0	0.56	1.29	0.75	0.83	2.74	10766	1368	11	0	6	0	0	logfile
✔	9CNS	45758	2025-05-19	2024-07-15	3.25	4.23	3.23	3.7	0.045	1.95	0.0	0.13	22.70	0.02	0.218	6.03	0.62	3.6	96.4	0.0	-2.84	0.48	0.54	-0.59	3.8	0.012	1.95	0.0	0.12	22.85	0.01	0.196	12.21	1.45	3.5	96.5	0.0	0.29	1.86	0.59	0.83	1.52	17826	2214	24	0	12	0	0	logfile
✔	9CNW	45764	2025-05-14	2024-07-15	2.6	2.60	2.57	2.5	0.003	0.58	0.0	0.04	12.85	0.00	2.133	1.84	0.00	1.8	98.2	0.0	1.26	0.78	0.84	4.36	2.5	0.004	0.64	0.0	0.05	16.22	0.00	2.514	3.54	1.84	2.2	97.8	0.0	1.28	0.41	0.80	0.88	3.73	11647	1493	5	0	0	0	0	logfile
✔	9CNY	45766	2025-05-13	2024-07-15	4.0	4.00	3.94	4.0	0.003	0.63	0.0	0.04	13.80	0.01	2.003	6.08	0.00	3.3	96.7	0.0	0.08	0.70	0.76	—	4.0	0.005	0.72	0.0	0.04	16.29	0.00	2.296	10.35	3.33	4.1	95.9	0.0	-0.11	1.80	0.73	0.79	—	10410	1333	5	0	0	0	0	logfile
✔	9CNZ	45767	2025-05-15	2024-07-15	3.1	3.13	3.12	3.1	0.004	0.68	0.0	0.05	13.57	0.01	2.259	3.52	0.00	2.2	97.8	0.0	0.43	0.76	0.83	3.46	3.1	0.002	0.55	0.0	0.04	15.40	0.00	2.501	5.70	1.90	2.0	98.0	0.0	1.01	1.26	0.75	0.85	2.79	12854	1638	11	0	6	0	0	logfile
✔	9CNX	45765	2025-05-17	2024-07-15	3.55	3.57	3.52	3.4	0.008	0.70	0.0	0.05	12.67	0.01	2.310	1.93	0.00	2.3	97.7	0.0	0.18	0.78	0.83	3.10	3.4	0.005	0.64	0.0	0.04	14.68	0.00	2.418	2.94	1.29	3.2	96.8	0.0	0.77	0.39	0.80	0.85	3.16	11582	1481	7	0	3	0	0	logfile
✔	9CMi	45749	2025-05-11	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.003	0.88	0.0	0.04	15.73	0.00	2.295	7.94	2.09	3.9	96.1	0.0	-0.17	0.96	0.76	0.79	2.81	7877	1025	7	0	1	2	0	logfile
✔	9CMP	45752	2025-05-10	2024-07-15	3.3	3.63	3.24	3.4	0.004	0.77	0.0	0.05	14.58	0.00	2.141	1.52	0.46	3.9	96.1	0.0	-1.15	0.73	0.66	2.05	3.4	0.003	0.61	0.0	0.04	16.17	0.00	2.274	7.68	2.52	3.5	96.5	0.0	-0.31	1.57	0.76	0.70	1.75	6211	768	4	43	1	0	0	logfile
✔	9CNU	45760	2025-05-13	2024-07-15	2.99	3.97	2.90	3.5	0.058	1.99	0.0	0.13	15.68	0.03	0.243	6.94	0.00	4.0	96.0	0.0	-2.17	0.64	0.68	1.91	3.5	0.051	4.21	0.0	0.33	24.00	0.01	0.181	10.83	1.79	2.4	97.6	0.0	1.49	3.32	0.66	0.84	2.92	11172	1374	18	0	12	0	0	logfile
✔	9CNV	45761	2025-05-13	2024-07-15	3.16	4.25	2.90	3.9	0.038	1.88	0.0	0.13	20.73	0.03	0.189	5.53	0.00	4.4	95.6	0.0	-1.59	0.64	0.67	1.12	3.9	0.028	2.45	1.0	0.19	19.54	0.01	0.203	12.03	2.00	3.0	97.0	0.0	1.46	1.98	0.71	0.84	1.97	11388	1398	18	0	12	0	0	logfile
✔	9iR4	60800	2025-05-16	2024-07-14	3.01	2.32	3.17	2.1	0.002	0.54	0.0	0.04	13.20	0.00	2.127	6.25	0.00	2.7	97.2	0.1	1.06	0.76	0.77	2.60	2.1	0.005	0.61	0.0	0.04	16.09	0.00	1.971	5.93	1.57	3.3	96.7	0.1	1.78	0.93	0.78	0.81	2.71	12604	1584	7	0	2	0	0	logfile
✔	9CMA	45745	2025-05-15	2024-07-13	3.97	6.75	4.14	4.2	0.003	0.71	0.0	0.04	19.10	0.00	2.126	22.26	0.00	6.3	93.5	0.2	-1.47	0.86	0.73	0.52	4.2	0.003	0.79	0.0	0.04	20.63	0.00	2.181	20.96	3.03	6.1	93.6	0.2	-1.43	2.77	0.87	0.78	0.39	12726	1397	6	86	0	0	0	logfile
✔	9iR3	60799	2025-05-16	2024-07-13	3.19	2.61	3.23	2.2	0.006	0.64	0.0	0.04	13.70	0.00	2.141	7.89	0.00	2.9	97.0	0.1	1.73	0.76	0.76	1.97	3.1	0.004	0.68	0.0	0.04	16.42	0.00	2.515	6.94	2.65	3.1	96.9	0.1	1.78	0.46	0.77	0.78	1.83	12591	1587	7	0	2	0	0	logfile
✔	9G3X	51017	2025-05-29	2024-07-12	4.5	6.67	4.68	4.3	0.002	0.55	0.0	0.04	5.01	0.00	2.058	2.95	0.00	3.7	96.2	0.1	0.58	0.71	0.61	—	4.4	0.003	0.60	0.0	0.04	3.89	0.00	2.385	1.12	0.00	8.0	91.9	0.0	1.30	1.65	0.73	0.65	—	32151	4506	10	0	0	0	9831	logfile
✔	9CLP	45728	2025-05-10	2024-07-12	3.43	3.82	3.38	3.8	0.012	0.53	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.003	0.57	0.0	0.04	14.29	0.00	2.255	5.14	1.82	3.3	96.7	0.0	-0.13	0.36	0.66	0.79	2.48	5035	650	5	0	11	0	0	logfile
✔	9G40	51020	2025-05-24	2024-07-12	4.3	4.66	4.20	4.3	0.002	0.47	0.0	0.03	11.68	0.00	1.977	11.41	2.28	4.9	95.1	0.0	1.89	0.63	0.77	—	4.3	0.003	0.53	0.0	0.03	12.37	0.00	2.336	9.04	0.00	4.3	95.7	0.0	1.61	0.72	0.63	0.77	—	24900	1527	5	0	0	0	12457	logfile

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