Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9G2U	50984	2025-05-09	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.79	0.00	2.572	6.44	1.55	0.7	99.3	0.0	6.39	4.28	0.70	0.83	0.49	3634	456	2	0	0	0	0	logfile
✔	9G2R	50981	2025-05-22	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.005	0.70	0.0	0.04	15.75	0.00	2.566	12.44	1.03	0.6	99.4	0.0	4.60	1.54	0.85	0.84	0.22	22620	2824	12	0	0	0	0	logfile
✔	9iPU	60781	2025-05-21	2024-07-11	4.3	7.75	4.30	3.7	0.007	1.11	0.0	0.06	27.55	0.01	1.810	11.23	1.63	3.6	96.4	0.0	1.41	0.87	0.66	—	3.6	0.004	0.63	0.0	0.04	27.15	0.00	2.324	14.47	0.00	3.4	96.6	0.0	1.12	1.76	0.92	0.84	—	15750	1130	15	340	2	0	0	logfile
✔	9G2W	50986	2025-05-09	2024-07-11	3.6	4.37	3.61	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.65	0.0	0.03	16.61	0.00	2.497	7.53	1.70	1.1	98.9	0.0	5.88	0.72	0.68	0.84	0.72	3838	478	2	0	0	0	0	logfile
✔	9iP4	60757	2025-05-15	2024-07-10	2.84	3.09	2.97	3.2	0.006	1.08	3.0	0.06	13.10	0.01	2.066	5.88	0.13	4.0	96.0	0.1	-0.16	0.61	0.82	4.02	3.2	0.002	0.57	0.0	0.04	16.19	0.00	2.456	3.60	1.99	3.5	96.5	0.0	0.99	1.01	0.68	0.86	3.48	13615	1702	6	0	1	0	0	logfile
✔	9CL1	45658	2025-05-21	2024-07-10	2.89	2.99	2.92	3.0	0.006	1.04	3.0	0.07	18.44	0.01	1.899	11.88	6.95	5.2	94.2	0.6	-0.46	0.41	0.54	2.55	3.0	0.003	0.62	0.0	0.05	17.43	0.01	2.016	6.15	2.32	2.8	97.1	0.1	1.36	2.34	0.73	0.84	3.40	20772	2547	24	0	9	156	0	logfile
✔	9CL7	45664	2025-05-15	2024-07-10	3.83	4.84	3.88	4.1	0.003	0.70	0.0	0.04	21.87	0.00	2.174	21.56	0.25	5.7	94.2	0.1	-0.85	0.90	0.82	0.87	4.1	0.006	0.80	0.0	0.04	22.26	0.00	1.935	21.52	4.51	6.8	93.1	0.1	-0.83	0.51	0.90	0.84	0.79	12714	1395	6	86	0	0	0	logfile
✔	9iP3	60756	2025-05-15	2024-07-10	3.1	3.37	3.22	3.4	0.012	1.22	0.0	0.07	11.48	0.01	2.213	12.97	0.00	4.8	95.2	0.0	-1.14	0.71	0.83	3.59	3.4	0.003	0.61	0.0	0.04	15.01	0.00	2.520	8.81	1.54	3.0	97.0	0.0	1.02	0.51	0.69	0.81	2.84	13464	1693	6	0	1	0	0	logfile
✔	9iP2	60755	2025-05-15	2024-07-10	2.7	2.85	2.72	2.9	0.012	1.44	3.0	0.08	13.14	0.01	1.708	7.06	0.13	3.9	96.0	0.1	-0.04	0.67	0.87	4.29	2.9	0.005	0.67	0.0	0.05	16.23	0.00	2.352	3.05	2.40	4.2	95.8	0.0	0.79	0.94	0.70	0.89	3.46	13606	1701	6	0	1	0	0	logfile
✔	9CL5	45662	2025-05-22	2024-07-10	2.48	2.84	2.60	2.9	0.004	0.68	0.0	0.05	16.19	0.01	0.056	8.35	2.15	3.0	96.7	0.2	0.74	0.58	0.61	0.33	2.7	0.004	0.63	0.0	0.04	16.46	0.01	2.032	5.40	2.06	3.5	96.4	0.1	1.39	1.47	0.73	0.89	4.19	22272	2688	30	0	6	819	0	logfile
✔	9CL6	45663	2025-05-23	2024-07-10	2.77	2.96	2.87	3.0	0.006	0.92	12.0	0.06	17.95	0.03	1.944	8.08	4.77	5.8	94.0	0.2	-0.75	0.53	0.58	0.65	2.9	0.003	0.64	0.0	0.04	17.01	0.01	2.110	6.55	1.70	3.9	95.8	0.3	0.84	1.66	0.74	0.86	3.35	23928	2850	30	0	6	822	0	logfile
✔	9CKU	45654	2025-05-28	2024-07-09	2.04	2.11	2.01	2.1	0.004	0.67	0.0	0.07	11.84	0.01	2.046	2.52	0.00	1.6	98.4	0.0	1.44	0.71	0.86	6.63	2.1	0.005	0.65	0.0	0.07	14.34	0.01	2.412	3.11	0.98	1.6	98.4	0.0	1.04	0.36	0.71	0.87	6.34	30660	1973	15	0	0	130	15361	logfile
✔	9CKV	45655	2025-05-15	2024-07-09	3.19	3.71	3.27	3.6	0.005	0.70	0.0	0.05	16.35	0.00	1.734	1.63	0.00	4.8	95.2	0.0	-0.12	0.67	0.71	3.86	3.6	0.003	0.55	0.0	0.04	15.02	0.00	1.930	2.37	0.85	4.2	95.8	0.0	-0.31	0.51	0.71	0.77	3.32	13268	872	11	0	26	0	6375	logfile
✔	9iNY	60712	2025-05-12	2024-07-08	3.6	3.79	3.16	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.005	0.69	0.0	0.05	14.11	0.00	2.566	9.26	2.33	9.0	90.1	0.9	-2.75	1.37	0.66	0.85	2.32	8793	1125	3	0	0	0	0	logfile
✔	9CK7	45643	2025-05-13	2024-07-08	3.45	3.77	3.60	3.7	0.005	1.04	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.004	0.79	0.0	0.04	14.29	0.00	2.388	8.64	4.18	4.8	95.2	0.0	-0.69	0.86	0.67	0.81	2.77	10026	1001	32	0	292	0	0	logfile
✔	9CK8	45644	2025-05-13	2024-07-08	3.04	3.30	3.15	3.3	0.006	1.01	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.004	0.71	0.0	0.05	13.54	0.00	2.529	4.93	1.77	2.8	97.2	0.0	-0.15	0.84	0.65	0.84	4.34	9966	1001	30	0	283	0	0	logfile
✔	9G0F	50932	2025-05-20	2024-07-08	3.7	4.34	3.87	4.0	0.007	0.97	2.0	0.05	18.56	0.00	1.900	9.56	1.17	2.9	97.1	0.0	0.94	0.86	0.81	1.78	4.0	0.004	0.60	0.0	0.04	17.48	0.00	1.836	8.46	1.60	2.7	97.3	0.0	1.37	0.79	0.88	0.86	1.59	20077	2389	16	32	14	0	0	logfile
✔	9iNH	60707	2025-05-13	2024-07-06	3.68	3.93	3.62	3.9	0.006	0.76	0.0	0.34	21.00	0.01	2.227	11.43	1.21	3.1	96.9	0.0	0.43	0.61	0.76	1.58	3.9	0.003	0.63	0.0	0.04	17.59	0.00	2.439	10.70	2.13	3.2	96.8	0.0	1.22	0.41	0.60	0.78	1.49	10933	1215	4	0	34	0	0	logfile
✔	9iND	60703	2025-05-11	2024-07-06	2.88	2.01	2.90	1.9	0.011	1.11	0.0	0.06	11.53	0.01	2.266	5.06	0.26	4.9	95.1	0.0	-3.25	0.76	0.77	5.00	1.9	0.005	0.73	0.0	0.05	14.00	0.00	2.530	8.30	2.34	4.2	95.8	0.0	-0.58	1.22	0.78	0.78	4.18	7644	1010	7	0	9	0	0	logfile
✔	9iNF	60705	2025-05-11	2024-07-06	3.36	3.58	3.31	3.6	0.003	0.67	0.0	0.04	17.90	0.00	2.212	14.77	0.56	3.5	96.5	0.0	1.40	0.57	0.80	1.29	3.6	0.003	0.65	0.0	0.04	17.03	0.00	2.472	12.89	4.51	3.4	96.6	0.0	1.80	0.37	0.55	0.81	1.25	7282	802	6	0	18	6	0	logfile

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