Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iMZ	60697	2025-05-14	2024-07-05	3.75	4.10	3.86	3.9	0.005	0.77	0.0	0.05	16.76	0.01	2.021	6.37	0.00	2.4	97.6	0.0	1.07	0.73	0.74	1.58	3.9	0.003	0.62	0.0	0.04	17.55	0.00	2.487	4.89	1.86	3.0	97.0	0.0	1.39	0.68	0.77	0.81	1.32	12167	1518	5	0	0	0	0	logfile
✔	9iN6	60702	2025-05-21	2024-07-05	2.8	3.08	2.61	3.0	0.004	0.58	0.0	0.04	12.03	0.00	2.266	4.11	0.13	3.1	96.9	0.0	-0.28	0.56	0.89	4.04	3.0	0.003	0.60	0.0	0.04	14.40	0.00	2.564	3.95	0.94	2.5	97.5	0.0	-0.05	2.43	0.55	0.91	3.46	22373	2897	8	0	0	0	0	logfile
✔	9CJ8	45625	2025-05-13	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.19	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.004	0.94	0.0	0.05	16.14	0.00	2.413	14.61	3.55	3.7	96.3	0.0	-1.01	0.60	0.67	0.80	1.88	9750	989	22	0	269	0	0	logfile
✔	9CJ7	45624	2025-05-14	2024-07-05	3.0	3.67	3.21	3.4	0.006	0.99	0.0	0.06	16.20	0.01	2.107	2.90	0.00	4.2	95.8	0.0	-0.13	0.85	0.86	4.17	3.4	0.003	0.70	0.0	0.04	13.69	0.00	2.404	5.76	1.82	2.8	97.2	0.0	0.83	1.17	0.82	0.83	3.47	11501	1300	38	0	89	0	0	logfile
✔	9FZ5	50893	2025-05-11	2024-07-04	3.57	3.95	3.63	4.0	0.004	0.74	1.0	0.05	18.55	0.00	2.055	8.35	6.16	9.8	89.7	0.5	-4.53	0.72	0.84	2.93	4.1	0.003	0.63	0.0	0.04	18.64	0.00	2.479	4.24	4.79	7.1	92.7	0.2	-3.25	0.37	0.69	0.84	2.59	8082	1006	3	0	0	0	0	logfile
✔	9CiA	45615	2025-05-11	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.003	0.67	0.0	0.04	16.19	0.00	2.463	11.08	4.13	3.7	96.3	0.0	-0.47	0.57	0.60	0.74	1.56	7918	1025	13	0	1	0	0	logfile
✔	9iMH	60689	2025-05-11	2024-07-03	4.2	3.96	3.73	4.1	0.006	1.06	7.0	0.08	15.41	0.01	2.171	19.62	0.70	12.0	84.5	3.5	-2.10	0.51	0.74	—	4.1	0.005	0.96	0.0	0.05	15.50	0.01	2.506	15.67	0.00	13.6	84.8	1.6	-1.61	0.82	0.51	0.78	—	7674	960	6	0	0	0	0	logfile
✔	9CHV	45603	2025-05-10	2024-07-02	3.95	4.29	3.75	4.3	0.011	1.54	33.0	0.11	18.20	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.003	0.66	0.0	0.04	18.22	0.00	2.436	6.33	3.79	4.4	95.6	0.0	-0.45	1.52	0.69	0.74	1.04	6644	873	4	0	1	0	0	logfile
✔	9iMA	60686	2025-05-11	2024-07-02	2.65	3.02	2.77	3.0	0.003	0.70	0.0	0.04	12.29	0.01	2.292	4.08	0.00	4.3	95.7	0.0	0.12	0.57	0.86	3.50	3.0	0.006	0.99	1.0	0.04	14.65	0.00	2.503	4.35	1.70	4.4	95.5	0.1	1.05	0.39	0.59	0.88	3.87	7472	933	6	0	6	0	0	logfile
✔	9iM6	60685	2025-05-12	2024-07-02	3.21	3.45	3.24	3.4	0.003	0.62	0.0	0.04	18.98	0.01	2.142	7.20	0.20	6.4	93.2	0.4	1.15	0.65	0.84	1.89	3.4	0.003	0.57	0.0	0.04	19.02	0.00	2.571	6.31	1.93	6.5	93.3	0.3	1.83	0.29	0.64	0.83	1.74	8982	1134	2	0	0	0	0	logfile
✔	9CHX	45604	2025-05-10	2024-07-02	3.5	3.91	3.86	3.9	0.007	0.70	0.0	0.04	17.12	0.01	2.146	9.43	0.00	4.9	95.1	0.0	-0.53	0.65	0.68	2.27	3.9	0.003	0.61	0.0	0.04	17.91	0.00	2.526	6.48	3.28	3.6	96.4	0.0	0.03	0.45	0.65	0.71	1.20	7129	889	5	0	2	0	0	logfile
✔	9CHT	45601	2025-05-11	2024-07-02	3.54	3.73	3.57	3.6	0.003	0.66	0.0	0.04	14.85	0.01	2.203	16.59	0.32	9.9	90.0	0.1	-1.62	0.54	0.47	0.88	3.7	0.003	0.66	0.0	0.04	16.54	0.00	2.448	13.45	1.16	9.5	90.4	0.1	-1.31	0.97	0.55	0.49	0.68	8445	1034	3	0	0	0	0	logfile
✔	9Ci1	45607	2025-05-29	2024-07-02	2.88	3.64	3.08	3.4	0.008	0.99	0.0	0.06	19.10	0.00	2.324	7.11	11.89	10.1	88.0	1.9	-2.92	0.85	0.86	3.75	3.4	0.004	0.66	0.0	0.05	17.79	0.00	2.355	2.97	2.11	6.6	92.5	0.8	-0.66	1.22	0.87	0.90	3.04	31780	4104	16	0	0	0	0	logfile
✔	9CHQ	45598	2025-05-19	2024-07-01	3.0	2.94	3.00	3.2	0.013	1.73	4.0	0.09	11.63	0.02	2.549	0.00	0.00	1.4	98.6	0.0	-0.39	0.51	0.78	3.82	3.2	0.003	0.52	0.0	0.04	16.04	0.00	2.479	1.94	1.57	1.9	98.1	0.0	2.64	1.72	0.49	0.77	3.35	19104	1172	4	0	0	0	9596	logfile
✔	9CGZ	45589	2025-05-10	2024-07-01	2.69	2.42	2.57	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.65	0.0	0.05	17.79	0.00	2.481	5.13	1.56	7.7	92.3	0.0	-2.43	0.97	0.39	0.79	5.02	6822	438	6	0	0	0	3480	logfile
✔	9CGX	45588	2025-05-10	2024-07-01	2.97	2.72	2.89	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.40	0.00	2.529	3.74	1.28	7.6	92.1	0.2	-2.80	1.38	0.35	0.77	4.81	6960	444	6	0	0	0	3540	logfile
✔	9CHP	45597	2025-05-19	2024-07-01	3.3	3.33	3.28	3.4	0.013	1.75	0.0	0.09	11.61	0.02	2.568	0.00	0.00	1.8	98.2	0.0	-0.91	0.53	0.78	3.14	3.4	0.003	0.51	0.0	0.04	15.32	0.00	2.439	1.78	1.18	4.0	96.0	0.0	2.56	1.28	0.52	0.78	3.03	19104	1172	4	0	0	0	9596	logfile
✔	9CHM	45590	2025-05-11	2024-07-01	3.47	4.54	3.49	4.2	0.004	0.82	0.0	0.04	16.49	0.00	2.176	16.62	0.35	5.8	94.2	0.0	-0.84	0.74	0.84	1.33	4.2	0.006	0.86	0.0	0.05	17.11	0.00	2.499	15.22	4.49	6.5	93.5	0.0	-1.00	1.78	0.73	0.85	1.09	7498	967	4	0	0	0	0	logfile
✔	9CHR	45599	2025-05-19	2024-07-01	3.5	3.52	3.44	3.6	0.013	1.70	0.0	0.09	11.42	0.02	2.557	0.00	0.00	2.2	97.8	0.0	-0.87	0.50	0.76	3.88	3.6	0.003	0.55	0.0	0.04	14.73	0.00	2.413	2.99	0.98	4.4	95.6	0.0	2.33	0.91	0.51	0.77	2.64	19104	1172	4	0	0	0	9596	logfile
✔	9CHS	45600	2025-05-19	2024-07-01	3.4	3.17	3.29	3.3	0.013	1.70	0.0	0.09	11.67	0.02	2.560	0.00	0.00	1.9	98.1	0.0	-0.93	0.52	0.79	3.56	3.3	0.002	0.47	0.0	0.04	14.72	0.00	2.363	2.46	1.18	1.8	98.2	0.0	2.92	1.73	0.50	0.79	2.44	19104	1172	4	0	0	0	9596	logfile

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