Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CHS	45600	2025-05-19	2024-07-01	3.4	3.17	3.29	3.3	0.013	1.70	0.0	0.09	11.67	0.02	2.560	0.00	0.00	1.9	98.1	0.0	-0.93	0.52	0.79	3.56	3.3	0.002	0.47	0.0	0.04	14.72	0.00	2.363	2.46	1.18	1.8	98.2	0.0	2.92	1.73	0.50	0.79	2.44	19104	1172	4	0	0	0	9596	logfile
✔	9CHR	45599	2025-05-19	2024-07-01	3.5	3.52	3.44	3.6	0.013	1.70	0.0	0.09	11.42	0.02	2.557	0.00	0.00	2.2	97.8	0.0	-0.87	0.50	0.76	3.88	3.6	0.003	0.55	0.0	0.04	14.73	0.00	2.413	2.99	0.98	4.4	95.6	0.0	2.33	0.91	0.51	0.77	2.64	19104	1172	4	0	0	0	9596	logfile
✔	9CGi	45580	2025-05-16	2024-06-29	2.92	3.60	3.10	3.4	0.005	0.88	2.0	0.05	12.93	0.01	2.249	3.35	0.24	2.3	97.7	0.0	-0.05	0.85	0.88	3.34	3.4	0.003	0.66	0.0	0.04	15.74	0.00	2.467	6.26	1.20	2.6	97.4	0.1	2.10	1.45	0.76	0.84	2.63	14751	1839	5	0	0	0	0	logfile
✔	9CG4	45568	2025-05-11	2024-06-28	3.37	4.27	3.50	3.9	0.003	0.61	0.0	0.04	19.71	0.00	2.236	9.08	0.35	4.6	95.4	0.0	-0.68	0.83	0.81	1.95	3.9	0.003	0.65	0.0	0.04	19.90	0.00	2.072	7.43	2.60	5.0	95.0	0.0	0.07	0.47	0.81	0.82	1.99	8375	966	6	43	0	0	0	logfile
✔	9CF3	45528	2025-05-18	2024-06-27	3.2	3.49	3.30	3.5	0.002	0.72	0.0	0.05	18.41	0.00	1.968	5.72	0.00	2.2	97.8	0.0	2.31	0.66	0.61	3.23	3.5	0.003	0.60	0.0	0.04	20.49	0.00	2.208	6.00	1.52	3.5	96.4	0.1	1.05	2.76	0.74	0.80	3.14	17651	888	5	98	0	0	8383	logfile
✔	9iKC	60655	2025-05-15	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.005	0.70	0.0	0.05	15.87	0.00	2.534	2.95	1.22	2.7	97.3	0.0	-0.17	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✔	9CFL	45550	2025-05-12	2024-06-27	2.3	2.52	2.42	2.7	0.008	1.21	2.0	0.07	25.65	0.02	1.887	3.76	3.83	1.1	98.9	0.0	-0.09	0.63	0.81	3.96	2.7	0.005	0.71	0.0	0.05	19.11	0.00	1.889	5.75	2.02	1.7	98.3	0.0	1.17	1.13	0.61	0.81	3.64	8925	1068	10	0	7	8	0	logfile
✔	9CF1	45526	2025-05-18	2024-06-27	3.52	3.91	3.74	3.7	0.013	1.84	1.0	0.10	20.92	0.02	1.358	1.05	0.76	6.0	93.5	0.5	-1.31	0.72	0.61	2.15	3.7	0.006	0.76	0.0	0.04	21.40	0.01	2.279	11.31	1.64	7.6	92.3	0.1	-1.03	1.09	0.77	0.76	1.47	17138	888	5	82	0	0	8199	logfile
✔	9CF0	45525	2025-05-18	2024-06-27	3.47	3.80	3.64	3.7	0.013	1.83	2.0	0.10	20.15	0.02	1.887	0.70	0.00	4.3	95.2	0.5	-1.20	0.71	0.62	2.71	3.7	0.003	0.62	0.0	0.04	20.57	0.00	2.352	5.51	0.76	4.1	95.8	0.1	0.73	0.99	0.77	0.79	2.25	17040	888	5	79	0	0	8166	logfile
✔	9CFV	45564	2025-05-17	2024-06-27	2.7	3.03	1.99	3.0	0.012	1.86	5.0	0.10	14.56	0.02	1.853	0.32	2.20	3.4	96.4	0.2	-1.64	0.50	0.66	3.63	3.0	0.003	0.66	0.0	0.04	16.40	0.00	2.019	5.37	1.72	2.5	97.5	0.1	0.99	0.60	0.60	0.80	2.86	15664	1961	8	0	6	0	0	logfile
✔	9CFX	45566	2025-05-17	2024-06-27	2.7	3.08	2.72	3.1	0.013	1.90	8.0	0.10	14.65	0.02	1.857	0.38	2.30	4.4	95.3	0.3	-2.20	0.63	0.69	3.26	3.1	0.003	0.67	0.0	0.04	16.98	0.00	1.963	6.36	2.83	2.8	97.2	0.1	0.67	0.71	0.68	0.77	2.33	15749	1972	8	0	6	0	0	logfile
✔	9CFW	45565	2025-05-17	2024-06-27	3.0	3.62	2.92	3.5	0.013	1.83	1.0	0.09	14.92	0.02	1.823	0.29	1.88	4.4	95.5	0.2	-1.69	0.72	0.64	2.79	3.5	0.003	0.74	0.0	0.04	16.14	0.00	1.884	8.36	1.76	2.6	97.4	0.0	0.79	0.73	0.80	0.81	1.98	15838	1981	9	0	7	0	0	logfile
✔	9CF2	45527	2025-05-19	2024-06-27	3.15	2.38	3.24	2.8	0.002	0.61	0.0	0.04	18.51	0.00	1.441	3.97	0.00	1.4	98.6	0.0	2.60	0.67	0.60	2.80	2.8	0.005	0.62	0.0	0.04	20.98	0.00	2.366	5.98	1.01	4.5	95.5	0.0	1.03	1.44	0.74	0.78	3.22	18387	888	7	121	0	0	8649	logfile
✔	9iKJ	60656	2025-05-26	2024-06-27	3.22	3.48	3.25	3.5	0.004	0.65	0.0	0.04	15.33	0.01	1.891	10.81	1.29	8.8	91.2	0.0	-3.09	0.65	0.86	3.27	3.5	0.005	0.69	0.0	0.04	16.16	0.01	2.459	6.41	2.96	9.4	90.6	0.0	-2.98	0.39	0.68	0.88	3.34	28464	3776	16	0	0	0	0	logfile
✔	9iKK	60657	2025-05-26	2024-06-27	3.51	3.86	3.59	3.9	0.003	0.70	0.0	0.04	15.43	0.00	2.199	12.01	0.52	5.2	94.8	0.0	-1.86	0.66	0.80	2.25	3.8	0.004	0.70	0.0	0.04	16.31	0.00	2.400	9.20	3.50	7.4	92.6	0.0	-2.38	1.67	0.67	0.83	2.04	28480	3792	16	0	0	0	0	logfile
✔	9CES	45517	2025-05-17	2024-06-27	3.28	3.52	3.31	3.5	0.013	1.96	0.0	0.10	23.23	0.03	2.515	1.01	0.91	4.1	95.9	0.0	-0.87	0.56	0.46	2.49	3.4	0.005	0.67	0.0	0.04	23.34	0.01	2.196	7.83	1.64	6.0	94.0	0.0	0.85	1.27	0.72	0.76	2.44	15839	612	4	181	0	0	7001	logfile
✔	9iK4	60648	2025-05-13	2024-06-26	3.34	3.55	3.33	3.5	0.013	1.41	1.0	0.26	19.37	0.01	1.881	9.85	0.00	14.1	85.9	0.1	-6.52	0.55	0.67	2.00	3.5	0.003	0.81	0.0	0.04	18.69	0.00	2.406	9.36	2.41	11.7	88.3	0.0	-3.61	0.63	0.58	0.76	1.78	10114	1214	4	0	4	0	0	logfile
✔	9FUU	50778	2025-05-12	2024-06-26	3.6	3.63	3.34	3.6	0.005	0.69	0.0	0.04	17.55	0.00	2.163	9.05	0.62	5.4	94.6	0.0	-3.08	0.65	0.83	0.99	3.6	0.004	0.98	1.0	0.04	18.13	0.00	2.220	8.77	5.17	5.0	94.9	0.1	-1.98	0.82	0.63	0.81	1.10	8822	1138	2	0	0	0	0	logfile
✔	9FUQ	50774	2025-05-12	2024-06-26	3.8	3.88	3.57	3.8	0.005	0.75	0.0	0.04	13.92	0.00	2.209	6.72	0.41	7.8	92.1	0.1	-4.19	0.64	0.81	1.29	3.8	0.003	0.72	0.0	0.04	15.98	0.00	2.486	5.67	2.69	7.1	92.9	0.1	-2.17	0.89	0.69	0.81	0.80	8924	1138	4	0	2	0	0	logfile
✔	9FUW	50780	2025-05-12	2024-06-26	3.8	4.20	3.89	4.0	0.004	0.73	2.0	0.04	17.19	0.00	2.221	13.46	0.31	5.7	94.2	0.1	-0.15	0.74	0.81	1.18	4.0	0.004	0.72	0.0	0.04	17.70	0.00	2.516	10.56	2.79	4.9	95.1	0.1	0.51	1.14	0.74	0.81	1.45	8822	1138	2	0	0	0	0	logfile

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