Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BJ4	44629	2025-05-26	2024-04-24	3.4	3.81	3.61	3.8	0.004	0.59	0.0	0.05	15.26	0.01	2.135	6.62	1.97	3.6	96.3	0.2	-0.10	0.70	0.77	2.05	3.8	0.002	0.58	0.0	0.04	15.97	0.00	2.473	4.70	2.19	3.0	96.9	0.1	0.17	0.33	0.67	0.80	1.67	28697	3690	11	0	4	0	0	logfile
✔	9F2Y	50166	2025-05-14	2024-04-24	4.39	4.59	4.32	4.4	0.005	0.77	0.0	0.13	14.95	0.01	2.111	16.69	0.16	5.5	94.5	0.1	-0.58	0.70	0.73	—	4.4	0.005	0.74	0.0	0.05	13.96	0.00	2.390	15.64	0.00	6.0	94.0	0.0	-0.69	1.13	0.71	0.76	—	10994	1336	4	0	5	0	0	logfile
✔	9BiS	44600	2025-05-12	2024-04-24	3.2	3.55	3.15	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.56	0.0	0.04	18.21	0.00	2.292	5.18	1.80	7.0	93.0	0.0	0.89	0.79	0.61	0.84	3.06	9444	595	3	0	1	0	4734	logfile
✔	8Z9Z	39873	2025-05-15	2024-04-24	3.5	3.90	3.62	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.50	0.0	0.04	18.33	0.00	2.443	7.85	3.19	2.4	97.6	0.0	3.28	0.30	0.61	0.79	1.47	12648	1519	8	0	6	0	0	logfile
✔	9BiT	44601	2025-05-12	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.55	0.0	0.04	18.26	0.00	2.250	4.23	2.00	6.3	93.7	0.0	0.63	0.33	0.63	0.85	2.57	9448	595	3	0	1	0	4734	logfile
✔	9F2W	50165	2025-05-22	2024-04-24	4.21	3.68	4.00	4.1	0.003	0.57	0.0	0.04	15.38	0.00	1.696	13.01	0.00	6.2	93.8	0.0	-0.24	0.73	0.73	—	3.5	0.003	0.56	0.0	0.04	16.16	0.00	2.314	7.47	0.09	7.0	93.0	0.0	-0.36	1.92	0.74	0.76	—	23412	1350	8	56	4	0	11450	logfile
✔	9BiU	44602	2025-05-12	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.004	0.60	0.0	0.04	17.10	0.00	2.283	5.28	1.60	7.0	93.0	0.0	0.81	0.31	0.62	0.85	2.46	9458	595	3	0	1	0	4738	logfile
✔	9BiH	44590	2025-05-18	2024-04-23	3.24	3.97	3.16	3.5	0.008	0.57	0.0	0.05	12.12	0.00	2.204	4.95	1.63	3.5	96.5	0.0	-0.56	0.77	0.58	0.37	3.5	0.004	0.59	0.0	0.04	14.45	0.00	2.501	7.74	1.19	2.8	97.2	0.0	-0.02	2.12	0.91	0.88	2.77	17576	2084	8	55	0	0	0	logfile
✔	9BiB	44586	2025-05-20	2024-04-23	3.81	4.09	3.87	4.0	0.004	0.62	12.0	0.06	7.50	0.00	2.200	3.34	4.65	3.0	96.9	0.1	-2.18	0.64	0.64	1.95	4.0	0.003	0.59	0.0	0.04	11.72	0.00	2.418	4.12	4.65	5.1	94.8	0.0	0.69	0.66	0.69	0.73	1.93	19269	3172	8	0	0	0	0	logfile
✔	9Bi9	44577	2025-05-11	2024-04-23	2.61	3.67	2.64	3.4	0.003	0.53	0.0	0.04	12.52	0.00	2.243	5.09	0.00	4.4	95.6	0.0	0.82	0.72	0.75	3.46	3.4	0.004	0.62	0.0	0.04	14.90	0.01	2.378	5.10	0.96	4.0	96.0	0.0	0.53	2.17	0.75	0.79	2.50	7578	497	2	0	1	0	3712	logfile
✔	9BiA	44585	2025-05-13	2024-04-23	3.0	3.28	3.03	3.3	0.003	0.60	0.0	0.04	13.72	0.00	2.333	1.44	0.00	1.8	98.2	0.0	0.99	0.44	0.77	3.80	3.3	0.003	0.50	0.0	0.04	15.79	0.00	2.413	4.03	1.08	0.9	98.9	0.2	3.52	0.66	0.52	0.83	2.99	10430	672	6	0	0	0	5263	logfile
✔	8Z9M	39863	2025-05-21	2024-04-23	3.3	2.26	—	2.0	0.005	0.62	1.0	0.04	14.42	0.00	2.228	4.73	0.24	3.5	96.5	0.0	0.06	0.78	0.77	1.95	2.1	0.004	0.63	0.0	0.04	16.69	0.00	2.496	3.74	1.96	4.7	95.3	0.0	-0.17	0.49	0.82	0.83	2.64	22016	2786	4	0	0	0	0	logfile
✔	9BiM	44593	2025-05-09	2024-04-23	3.67	3.99	3.64	4.0	0.004	0.75	0.0	0.04	13.02	0.01	2.259	4.86	0.00	2.9	97.1	0.0	0.00	0.55	0.80	1.98	4.0	0.003	0.58	0.0	0.04	13.70	0.00	2.635	6.23	1.45	2.7	97.3	0.0	1.78	0.33	0.60	0.82	1.38	3992	516	2	0	1	0	0	logfile
✔	9F2K	50149	2025-05-17	2024-04-23	2.48	2.66	2.53	2.7	0.004	0.64	0.0	0.04	16.42	0.00	2.026	10.48	1.14	2.2	97.8	0.0	-0.09	0.65	0.83	4.08	2.7	0.003	0.56	0.0	0.04	16.44	0.00	2.559	4.96	2.80	1.4	98.6	0.0	1.14	0.89	0.66	0.84	4.36	16184	2052	8	0	4	0	0	logfile
✔	8Z9A	39858	2025-05-15	2024-04-23	3.0	3.24	3.06	3.3	0.005	0.84	0.0	0.04	16.75	0.01	2.163	6.19	1.56	2.3	97.7	0.0	2.18	0.58	0.81	1.75	3.3	0.004	0.53	0.0	0.04	16.81	0.00	2.586	5.43	2.62	2.3	97.7	0.0	3.14	1.11	0.54	0.79	1.85	13021	1557	8	0	8	0	0	logfile
✔	8Z9E	39861	2025-05-20	2024-04-23	3.13	3.34	3.22	3.3	0.009	1.18	1.0	0.06	18.26	0.01	2.136	7.61	0.69	4.3	95.3	0.4	-2.57	0.70	0.80	2.47	3.4	0.004	0.77	0.0	0.04	18.50	0.00	2.026	8.93	2.98	2.8	97.2	0.0	0.15	0.48	0.71	0.82	2.63	20770	2484	20	73	7	0	0	logfile
✔	8Z9R	39868	2025-05-26	2024-04-23	2.58	3.13	2.70	3.0	0.003	0.53	0.0	0.04	13.83	0.00	2.121	7.99	0.00	4.2	95.8	0.0	0.23	0.72	0.81	3.56	3.0	0.003	0.56	1.0	0.04	16.23	0.00	2.304	6.61	1.40	3.7	96.3	0.0	0.53	1.06	0.72	0.81	3.01	28075	3358	11	47	2	0	0	logfile
✔	8Z9Y	39872	2025-05-18	2024-04-23	2.5	2.86	2.66	2.8	0.003	0.65	0.0	0.04	16.90	0.00	2.160	9.43	0.11	6.9	93.0	0.1	0.55	0.62	0.76	2.65	2.8	0.003	0.62	0.0	0.04	17.78	0.01	2.135	7.15	2.07	6.3	93.7	0.1	0.55	0.42	0.66	0.79	2.66	16671	1980	6	0	0	0	0	logfile
✔	9F2J	50147	2025-05-20	2024-04-23	3.98	3.99	3.69	3.8	0.005	0.72	0.0	0.13	18.60	0.01	2.035	10.89	1.19	4.1	95.9	0.0	0.13	0.69	0.69	1.98	3.8	0.003	0.66	0.0	0.04	17.25	0.00	2.465	8.70	2.94	3.8	96.2	0.0	0.33	1.20	0.75	0.82	1.97	14646	1800	5	0	9	0	0	logfile
✔	9Bio	44595	2025-05-25	2024-04-23	2.83	2.66	2.87	3.2	0.005	0.78	0.0	0.05	16.75	0.01	1.922	4.84	0.22	5.9	94.0	0.1	-0.51	0.75	0.82	3.76	3.2	0.004	0.79	1.0	0.05	14.78	0.00	2.287	5.60	1.95	5.9	94.1	0.1	-0.11	0.37	0.70	0.77	3.63	27498	3153	68	0	195	0	0	logfile

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