Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9Bio	44595	2025-05-25	2024-04-23	2.83	2.66	2.87	3.2	0.005	0.78	0.0	0.05	16.75	0.01	1.922	4.84	0.22	5.9	94.0	0.1	-0.51	0.75	0.82	3.76	3.2	0.004	0.79	1.0	0.05	14.78	0.00	2.287	5.60	1.95	5.9	94.1	0.1	-0.11	0.37	0.70	0.77	3.63	27498	3153	68	0	195	0	0	logfile
✔	9BHX	44556	2025-05-11	2024-04-22	3.94	4.14	3.92	4.1	0.013	1.34	0.0	0.05	17.52	0.01	1.661	20.33	0.44	6.7	92.8	0.5	-1.38	0.72	0.75	1.79	4.1	0.005	0.81	0.0	0.05	18.07	0.01	2.469	13.61	5.20	8.0	91.8	0.2	-1.31	0.54	0.73	0.76	1.82	8376	1048	1	0	0	0	0	logfile
✔	8Z93	39853	2025-05-09	2024-04-22	4.65	3.37	2.06	4.1	0.006	1.05	0.0	0.06	13.34	0.00	2.060	54.47	0.00	38.9	61.1	0.0	-7.84	0.40	0.61	—	4.4	0.004	0.95	0.0	0.07	13.75	0.00	2.556	29.41	0.00	27.8	72.2	0.0	-6.80	3.22	0.28	0.46	—	477	60	3	0	0	0	0	logfile
✔	9F2B	50146	2025-05-18	2024-04-22	3.49	3.73	3.53	3.7	0.007	0.73	0.0	0.15	18.90	0.01	2.172	9.59	0.97	4.2	95.8	0.0	0.16	0.73	0.82	2.86	3.7	0.005	0.62	0.0	0.05	17.49	0.00	2.355	5.72	3.31	4.5	95.5	0.0	-0.01	0.80	0.75	0.86	2.95	11208	1359	5	0	8	0	0	logfile
✔	9Bi4	44558	2025-05-17	2024-04-22	3.2	3.36	3.16	3.3	0.008	1.03	2.0	0.06	18.97	0.01	1.821	11.38	7.50	5.4	94.1	0.4	-2.14	0.77	0.78	3.36	3.3	0.004	0.59	0.0	0.04	18.84	0.00	1.941	5.05	3.45	4.7	95.2	0.1	0.54	1.16	0.80	0.87	2.82	15869	1881	10	44	8	0	0	logfile
✔	8Z94	39854	2025-05-09	2024-04-22	4.56	3.17	2.04	4.4	0.007	1.42	0.0	0.08	16.60	0.01	2.126	146.46	0.00	45.0	55.0	0.0	-7.88	0.28	0.46	—	4.2	0.008	1.56	0.0	0.07	16.45	0.01	2.452	53.54	0.00	50.0	50.0	0.0	-8.01	1.97	0.29	0.49	—	507	66	3	0	0	0	0	logfile
✔	9F2A	50143	2025-05-15	2024-04-22	2.91	2.22	—	2.0	0.004	0.57	0.0	0.04	12.98	0.01	2.218	3.12	0.00	2.7	97.3	0.0	0.23	0.82	0.82	3.64	2.0	0.004	0.61	0.0	0.05	16.34	0.01	2.143	3.70	1.16	2.8	97.2	0.0	0.34	0.37	0.82	0.82	2.95	13557	1692	5	0	4	0	0	logfile
✔	9F25	50138	2025-05-10	2024-04-22	3.7	3.97	3.75	3.9	0.002	0.53	0.0	0.04	16.77	0.00	2.204	9.30	0.13	1.9	98.1	0.0	0.58	0.72	0.77	0.82	3.9	0.003	0.58	0.0	0.04	16.97	0.00	2.544	8.55	2.68	2.2	97.8	0.0	0.75	2.70	0.73	0.78	0.86	6717	830	1	0	0	0	0	logfile
✔	9BHT	44552	2025-05-15	2024-04-22	3.26	4.41	3.27	3.3	0.006	1.13	4.0	0.05	19.39	0.01	2.058	21.47	2.05	6.0	93.0	1.0	-0.68	0.84	0.70	1.70	3.4	0.003	0.75	0.0	0.05	18.70	0.00	2.485	11.61	2.69	4.9	94.8	0.3	0.46	1.18	0.91	0.83	1.22	12725	1562	12	4	2	0	0	logfile
✔	8Z90	39852	2025-05-16	2024-04-22	2.87	3.20	2.86	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.004	0.68	0.0	0.04	16.81	0.01	2.445	9.89	1.20	4.3	95.7	0.0	0.12	1.00	0.81	0.90	3.31	13481	1575	6	35	1	0	0	logfile
✔	8Z99	39857	2025-05-24	2024-04-22	3.2	3.46	3.29	3.5	0.009	1.34	1.0	0.08	17.28	0.02	2.058	7.16	2.03	5.2	94.8	0.0	-2.48	0.71	0.81	2.51	3.5	0.005	0.67	0.0	0.04	17.68	0.00	1.931	9.79	3.09	3.9	96.1	0.0	-0.32	1.05	0.75	0.84	2.35	25517	3030	24	100	9	0	0	logfile
✔	8Z8X	39850	2025-05-17	2024-04-22	3.06	3.36	3.11	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.63	0.0	0.04	16.40	0.00	2.530	8.99	1.09	4.6	95.4	0.0	0.00	1.33	0.82	0.90	2.81	14768	1730	6	35	1	0	0	logfile
✔	9F29	50140	2025-05-15	2024-04-22	2.94	2.21	—	2.0	0.004	0.52	0.0	0.04	13.45	0.00	2.256	3.38	0.00	3.7	96.3	0.0	-0.15	0.81	0.82	3.62	2.0	0.002	0.52	0.0	0.04	16.32	0.00	2.409	3.60	1.58	3.0	97.0	0.0	0.47	1.04	0.81	0.82	2.85	13520	1688	5	0	4	0	0	logfile
✔	9BHW	44555	2025-05-12	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.63	0.0	0.04	15.95	0.00	2.464	5.02	1.13	2.4	97.6	0.0	1.94	0.67	0.79	0.85	4.16	8759	1071	8	4	0	0	0	logfile
✔	8Z8J	39848	2025-05-16	2024-04-22	3.16	3.46	3.18	3.4	0.002	0.55	0.0	0.04	13.58	0.01	2.218	9.57	0.00	4.7	95.3	0.0	-0.26	0.79	0.87	2.49	3.3	0.002	0.57	0.0	0.04	15.13	0.00	2.442	7.96	1.20	4.3	95.7	0.0	0.36	0.37	0.80	0.89	2.13	13766	1665	5	15	0	0	0	logfile
✔	8Z8N	39849	2025-05-15	2024-04-22	2.79	3.11	2.79	3.0	0.003	0.56	0.0	0.04	12.85	0.01	2.114	10.07	0.00	4.2	95.8	0.0	-0.39	0.75	0.84	2.78	3.0	0.003	0.65	0.0	0.04	16.33	0.00	2.451	8.38	2.07	4.3	95.7	0.0	-0.12	1.01	0.77	0.87	2.84	12485	1510	5	15	0	0	0	logfile
✔	8Z85	39838	2025-05-13	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.005	0.60	0.0	0.04	15.49	0.00	2.471	5.74	1.69	2.6	97.4	0.0	0.61	1.52	0.80	0.88	4.41	10467	1256	5	18	0	0	0	logfile
✔	8Z7S	39826	2025-05-09	2024-04-21	3.05	3.26	2.92	3.3	0.004	0.56	0.0	0.04	16.81	0.01	2.234	8.47	0.30	2.9	97.1	0.0	0.35	0.59	0.83	1.68	3.3	0.003	0.60	0.0	0.04	16.94	0.00	2.589	8.95	3.30	2.1	97.9	0.0	2.73	0.43	0.58	0.83	2.11	3116	387	2	0	1	0	0	logfile
✔	8Z7R	39825	2025-05-09	2024-04-21	3.15	3.31	3.09	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.68	0.0	0.04	16.63	0.00	2.595	9.96	4.20	2.9	97.1	0.0	1.64	0.41	0.57	0.81	1.81	3098	387	1	0	0	0	0	logfile
✔	9BHL	44549	2025-05-19	2024-04-21	2.8	3.00	2.77	3.2	0.003	0.61	0.0	0.04	14.81	0.00	1.982	8.77	0.12	3.8	96.2	0.0	-0.22	0.33	0.40	1.46	3.1	0.003	0.63	0.0	0.04	16.22	0.00	2.280	7.79	3.09	5.0	94.9	0.1	-0.70	1.91	0.51	0.64	1.42	15287	969	4	0	0	0	7571	logfile

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