Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ERN	19927	2025-05-09	2024-03-24	2.5	2.72	2.65	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.003	0.59	0.0	0.05	15.91	0.00	2.598	2.28	0.76	1.1	98.9	0.0	-1.59	0.98	0.43	0.91	6.10	3444	450	6	0	0	0	0	logfile
✔	9B61	44234	2025-05-19	2024-03-23	2.81	3.15	2.76	3.1	0.005	0.80	0.0	0.04	17.30	0.00	2.154	11.12	3.10	2.7	97.3	0.0	1.40	0.63	0.78	1.89	3.1	0.004	0.70	0.0	0.04	17.28	0.00	2.459	9.70	2.33	2.7	97.3	0.0	1.47	0.41	0.64	0.82	2.04	18447	2384	8	0	0	0	0	logfile
✔	9B6A	44251	2025-05-19	2024-03-23	3.35	2.74	3.30	3.1	0.003	0.50	0.0	0.04	16.79	0.00	2.196	7.53	0.26	2.1	97.9	0.0	2.10	0.57	0.79	2.33	3.1	0.003	0.50	0.0	0.04	17.02	0.00	2.489	7.29	2.57	2.7	97.3	0.0	2.40	0.33	0.57	0.79	2.27	18493	2378	8	0	0	0	0	logfile
✔	9B67	44248	2025-05-19	2024-03-23	3.39	2.74	3.34	3.3	0.003	0.49	0.0	0.04	16.88	0.00	2.168	6.31	0.26	2.3	97.7	0.0	1.73	0.59	0.82	2.61	3.3	0.002	0.50	0.0	0.04	17.10	0.00	2.550	5.58	1.85	2.1	97.9	0.0	2.39	0.88	0.58	0.80	2.24	18435	2372	8	0	0	0	0	logfile
✔	9ERi	19915	2025-05-15	2024-03-23	3.3	3.76	3.38	3.7	0.011	1.52	0.0	0.05	15.83	0.01	2.216	4.67	1.86	5.4	94.0	0.5	-0.60	0.67	0.77	1.68	3.7	0.003	1.16	0.0	0.04	15.97	0.00	1.379	5.99	3.12	6.2	93.5	0.3	0.48	0.30	0.62	0.78	1.61	12704	1688	11	0	16	0	0	logfile
✔	9B68	44249	2025-05-20	2024-03-23	3.6	3.60	3.54	3.6	0.003	0.62	0.0	0.04	16.03	0.00	2.203	6.44	0.27	2.9	97.1	0.0	-0.07	0.73	0.82	3.47	3.6	0.003	0.55	0.0	0.04	15.14	0.00	2.504	5.21	3.11	3.3	96.7	0.0	0.32	0.39	0.75	0.84	3.07	11364	1496	9	0	11	0	0	logfile
✔	9B69	44250	2025-05-20	2024-03-23	3.69	3.29	3.52	3.3	0.003	0.50	0.0	0.04	16.28	0.00	2.177	5.70	0.36	3.0	97.0	0.0	0.73	0.67	0.80	3.44	3.3	0.002	0.50	0.0	0.04	15.18	0.00	2.424	5.02	2.93	2.7	97.3	0.0	0.77	0.89	0.68	0.81	3.35	11370	1496	9	0	11	0	0	logfile
✔	9B65	44247	2025-05-11	2024-03-23	3.03	2.60	2.87	3.0	0.007	0.82	0.0	0.05	9.88	0.00	2.000	29.36	0.00	7.6	92.3	0.1	-4.23	0.58	0.79	4.91	3.0	0.003	0.68	0.0	0.04	15.09	0.00	2.491	7.85	2.63	4.3	95.6	0.1	-1.22	1.08	0.56	0.79	3.31	8463	1111	6	0	1	0	0	logfile
✔	9B5Z	44232	2025-05-19	2024-03-23	2.71	2.93	2.67	2.9	0.003	0.56	0.0	0.04	17.45	0.00	2.227	8.03	2.18	2.6	97.3	0.0	1.82	0.70	0.86	2.45	2.9	0.003	0.58	0.0	0.04	17.46	0.00	2.497	7.17	3.10	2.5	97.5	0.0	2.31	0.92	0.68	0.86	2.34	18680	2406	8	0	0	0	0	logfile
✔	9ERK	19919	2025-05-15	2024-03-23	2.8	3.50	2.88	3.3	0.004	1.13	0.0	0.05	16.19	0.01	2.289	2.77	2.82	7.0	92.4	0.5	-0.70	0.81	0.87	2.78	3.3	0.003	0.97	0.0	0.04	16.22	0.00	2.282	3.78	1.63	6.6	93.1	0.2	0.50	1.57	0.69	0.82	2.76	12667	1688	12	0	22	0	0	logfile
✔	9ERL	19920	2025-05-15	2024-03-23	3.0	3.76	3.15	3.6	0.004	1.13	0.0	0.05	16.24	0.01	2.271	2.88	1.41	6.9	92.6	0.5	-0.77	0.78	0.80	2.08	3.6	0.006	1.09	0.0	0.05	16.40	0.01	2.310	4.40	2.08	7.5	92.1	0.4	0.46	0.50	0.71	0.83	2.18	12663	1688	12	0	18	0	0	logfile
✔	9ERJ	19916	2025-05-15	2024-03-23	2.9	3.75	3.06	3.5	0.004	1.10	0.0	0.05	16.05	0.01	2.277	3.12	1.41	7.2	92.3	0.5	-1.42	0.81	0.87	2.29	3.5	0.008	1.10	0.0	0.04	16.35	0.00	2.291	3.78	1.78	7.6	92.0	0.4	0.12	1.59	0.69	0.81	2.27	12663	1688	12	0	18	0	0	logfile
✔	9B64	44245	2025-05-19	2024-03-23	3.56	2.72	3.47	3.4	0.003	0.64	0.0	0.04	16.81	0.01	2.201	9.65	0.15	2.6	97.4	0.0	1.70	0.61	0.81	1.69	3.5	0.003	0.59	0.0	0.04	17.17	0.00	2.503	8.45	2.77	2.5	97.5	0.0	2.16	1.30	0.62	0.82	1.66	18493	2378	8	0	0	0	0	logfile
✔	9B62	44235	2025-05-19	2024-03-23	2.9	3.27	—	3.1	0.003	0.44	0.0	0.04	10.59	0.00	1.851	4.24	0.62	3.5	96.5	0.0	1.28	0.81	0.84	3.78	3.1	0.003	0.55	0.0	0.04	14.38	0.00	1.853	4.16	1.61	2.6	97.4	0.0	1.29	2.33	0.82	0.87	3.06	19287	2414	9	0	4	0	0	logfile
✔	9B5L	44216	2025-05-13	2024-03-22	3.3	4.02	3.59	3.8	0.010	0.66	0.0	0.04	10.25	0.00	1.933	2.48	1.42	2.2	97.8	0.0	1.42	0.80	0.81	2.28	3.8	0.002	0.56	0.0	0.04	13.97	0.00	2.450	5.15	1.68	1.6	98.4	0.0	1.41	1.65	0.82	0.84	1.75	10117	1283	6	0	2	0	0	logfile
✔	9B5S	44223	2025-05-12	2024-03-22	2.96	3.46	3.03	3.3	0.010	0.63	0.0	0.04	9.82	0.00	1.986	1.18	1.21	2.0	98.0	0.0	1.20	0.79	0.85	3.45	3.3	0.004	0.55	0.0	0.04	13.45	0.00	1.926	3.72	2.22	2.2	97.8	0.0	1.00	1.16	0.77	0.85	3.27	8935	1133	5	0	4	0	0	logfile
✔	9B5M	44217	2025-05-12	2024-03-22	2.79	3.25	2.82	3.1	0.010	0.62	0.0	0.04	9.70	0.00	2.034	1.18	0.91	2.0	98.0	0.0	1.13	0.67	0.75	3.99	3.1	0.002	0.51	0.0	0.04	13.12	0.00	2.029	2.82	0.91	2.0	98.0	0.0	1.26	1.55	0.69	0.78	3.76	8935	1133	5	0	4	0	0	logfile
✔	9B57	44202	2025-05-10	2024-03-22	3.37	3.88	3.35	3.7	0.003	0.47	0.0	0.04	10.22	0.00	1.831	2.48	1.29	4.4	95.6	0.0	1.13	0.81	0.80	2.15	3.7	0.005	0.58	0.0	0.04	13.53	0.00	2.543	7.33	2.39	4.4	95.6	0.0	1.22	1.20	0.80	0.81	1.51	4871	599	4	0	1	0	0	logfile
✔	9B56	44201	2025-05-10	2024-03-22	3.35	3.89	3.38	3.8	0.003	0.46	0.0	0.04	10.30	0.00	1.794	2.89	1.29	5.2	94.8	0.0	1.28	0.81	0.80	2.19	3.7	0.006	0.59	0.0	0.04	13.43	0.00	2.527	7.33	1.84	4.4	95.6	0.0	1.11	0.57	0.84	0.84	2.03	4871	599	4	0	1	0	0	logfile
✔	9B5C	44207	2025-05-13	2024-03-22	2.5	3.00	2.51	2.8	0.010	0.64	0.0	0.04	10.21	0.00	2.036	1.37	0.66	1.7	98.3	0.0	1.33	0.70	0.80	4.37	2.8	0.003	0.50	0.0	0.04	13.51	0.00	2.013	2.74	1.89	1.3	98.7	0.0	1.55	0.26	0.72	0.82	3.75	9536	1209	6	0	4	0	0	logfile

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