Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YUT	39582	2025-05-11	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.002	0.54	0.0	0.04	14.49	0.00	2.414	4.02	1.68	2.0	98.0	0.0	2.17	0.62	0.61	0.78	2.67	8229	1041	6	0	2	0	0	logfile
✔	8YUU	39583	2025-05-12	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.003	0.55	0.0	0.04	14.27	0.00	2.581	4.18	1.95	2.4	97.6	0.0	1.93	0.53	0.65	0.83	3.42	9037	1145	6	0	2	0	0	logfile
✔	9B7X	44327	2025-05-19	2024-03-27	2.76	2.81	2.68	2.9	0.009	0.94	3.0	0.06	10.41	0.00	1.980	13.51	0.81	2.6	97.4	0.0	-1.09	0.67	0.82	4.28	2.8	0.005	0.68	0.0	0.04	14.92	0.00	2.276	6.69	2.05	3.3	96.7	0.0	-0.71	1.09	0.65	0.84	3.80	19103	2424	9	0	1	0	0	logfile
✔	9B73	44299	2025-05-11	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.51	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.53	0.0	0.04	13.86	0.00	2.026	4.82	0.59	1.0	99.0	0.0	0.79	1.23	0.76	0.90	4.44	8016	978	9	0	15	66	0	logfile
✔	9B79	44304	2025-05-11	2024-03-27	2.71	2.95	2.77	3.0	0.003	0.60	0.0	0.05	12.08	0.00	2.229	6.42	0.00	2.4	97.6	0.0	0.94	0.58	0.72	2.58	3.0	0.005	0.72	0.0	0.05	15.57	0.00	2.441	7.68	3.54	2.4	97.6	0.0	1.08	1.76	0.63	0.79	2.22	7876	1044	4	0	0	0	0	logfile
✔	9B7S	44322	2025-05-12	2024-03-27	2.84	2.12	2.75	3.0	0.008	0.96	0.0	0.06	11.28	0.01	2.076	14.63	1.11	2.6	97.4	0.0	-1.60	0.68	0.88	5.48	3.0	0.006	0.66	0.0	0.04	15.01	0.00	2.545	4.47	1.31	4.4	95.6	0.0	-0.47	1.14	0.66	0.89	5.07	9273	1183	8	0	0	0	0	logfile
✔	9EUP	19979	2025-05-17	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.56	0.0	0.04	14.20	0.01	2.122	4.85	1.11	3.3	96.7	0.0	0.59	0.35	0.56	0.77	3.32	14966	965	4	0	6	0	7364	logfile
✔	9ESM	19943	2025-05-30	2024-03-26	3.06	3.56	3.07	3.4	0.008	0.91	0.0	0.04	16.11	0.02	2.187	7.73	0.36	1.3	98.7	0.0	0.01	0.59	0.85	2.86	3.4	0.003	0.59	0.0	0.04	14.33	0.00	2.249	6.81	3.25	1.0	99.0	0.0	0.91	0.49	0.60	0.87	2.92	32749	3800	250	0	731	0	0	logfile
✔	9ETM	19944	2025-05-11	2024-03-26	3.35	3.68	3.41	3.7	0.003	0.65	0.0	0.04	17.42	0.01	2.377	2.14	0.00	2.8	97.2	0.0	-0.09	0.58	0.75	2.42	3.7	0.004	0.80	0.0	0.05	17.44	0.00	2.442	9.91	3.23	2.5	97.5	0.0	1.24	1.34	0.57	0.75	2.34	7404	928	15	0	5	0	0	logfile
✔	8YU7	39573	2025-05-13	2024-03-26	3.01	3.45	3.04	3.4	0.007	1.07	0.0	0.07	16.84	0.00	2.110	16.43	0.81	6.4	93.6	0.0	0.96	0.65	0.77	2.75	3.4	0.004	0.67	0.0	0.04	15.63	0.00	2.555	9.00	4.55	6.8	93.2	0.0	0.66	0.27	0.51	0.78	2.50	9616	1120	8	0	20	0	0	logfile
✔	9B6P	44273	2025-05-18	2024-03-25	3.13	2.58	2.96	2.9	0.006	0.95	3.0	0.06	10.47	0.00	2.076	22.24	1.82	3.1	96.9	0.0	-1.99	0.61	0.75	3.90	2.8	0.005	0.71	0.0	0.04	14.97	0.00	2.505	9.70	3.69	5.3	94.7	0.0	-1.34	0.59	0.60	0.78	2.93	17668	2247	8	0	0	0	0	logfile
✔	8YT8	39568	2025-05-18	2024-03-25	3.5	3.97	3.51	3.8	0.004	0.70	0.0	0.05	19.50	0.00	2.129	9.74	0.24	5.9	93.9	0.1	0.12	0.74	0.81	1.48	3.8	0.003	0.66	0.0	0.04	16.62	0.00	2.385	7.60	3.33	5.6	94.3	0.1	0.24	0.29	0.73	0.80	1.70	16309	2092	24	0	34	0	0	logfile
✔	9B6M	44266	2025-05-13	2024-03-25	3.2	3.71	3.49	3.7	0.012	1.41	0.0	0.08	17.29	0.01	2.175	15.03	4.07	6.2	93.3	0.4	-1.12	0.76	0.76	2.08	3.7	0.005	0.67	0.0	0.05	17.43	0.00	2.504	10.70	3.80	5.3	94.7	0.0	-0.55	0.44	0.75	0.82	1.88	9803	1220	2	0	0	0	0	logfile
✔	9B6N	44271	2025-05-15	2024-03-25	3.31	3.01	3.06	3.1	0.008	0.91	0.0	0.06	9.76	0.01	2.206	11.75	0.62	2.5	97.5	0.0	-1.94	0.62	0.89	5.41	3.1	0.005	0.63	0.0	0.04	13.58	0.00	2.290	3.42	2.21	3.4	96.6	0.0	-0.86	0.45	0.61	0.90	4.86	13226	1658	5	0	0	0	0	logfile
✔	9B6T	44277	2025-05-14	2024-03-25	2.54	3.38	2.48	3.1	0.009	0.94	0.0	0.06	10.14	0.00	1.846	16.25	0.84	2.8	97.2	0.0	-1.47	0.75	0.87	5.27	3.1	0.006	0.90	1.0	0.05	14.27	0.00	2.152	7.89	1.52	3.6	96.4	0.0	-0.49	0.92	0.75	0.88	4.30	12108	1550	8	0	0	0	0	logfile
✔	9B6Q	44274	2025-05-19	2024-03-25	2.77	2.30	2.59	2.5	0.006	0.92	0.0	0.06	10.15	0.00	1.798	11.66	0.54	2.4	97.6	0.0	-1.40	0.71	0.87	5.57	2.5	0.005	0.80	1.0	0.04	14.56	0.00	2.407	4.39	2.34	2.3	97.7	0.0	-0.72	0.48	0.70	0.88	4.95	18765	2379	8	0	0	0	0	logfile
✔	9ES7	19938	2025-05-17	2024-03-25	1.94	2.49	1.96	2.2	0.010	0.54	0.0	0.04	12.59	0.00	1.967	1.81	0.37	1.6	98.4	0.0	1.66	0.83	0.91	5.64	2.2	0.004	0.74	0.0	0.04	14.78	0.01	2.483	2.18	0.85	2.2	97.8	0.0	2.16	0.37	0.80	0.92	4.40	16413	1950	46	0	22	329	0	logfile
✔	9ES9	19940	2025-05-18	2024-03-25	2.33	3.04	2.37	2.8	0.011	0.54	0.0	0.04	12.29	0.00	1.994	3.25	0.61	3.2	96.8	0.0	0.37	0.77	0.88	4.87	2.9	0.004	0.63	0.0	0.04	14.86	0.00	2.545	2.49	1.15	3.2	96.8	0.0	1.84	1.26	0.76	0.89	3.67	16450	1974	40	0	24	206	0	logfile
✔	9ERN	19927	2025-05-09	2024-03-24	2.5	2.72	2.65	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.003	0.59	0.0	0.05	15.91	0.00	2.598	2.28	0.76	1.1	98.9	0.0	-1.59	0.98	0.43	0.91	6.10	3444	450	6	0	0	0	0	logfile
✔	8YSZ	39566	2025-05-14	2024-03-24	3.38	4.06	3.43	3.6	0.003	0.66	0.0	0.04	14.55	0.00	2.017	7.23	0.72	7.5	92.5	0.0	-1.65	0.80	0.80	2.77	3.6	0.003	0.64	0.0	0.04	15.50	0.00	2.510	6.23	1.93	6.7	93.2	0.1	-1.49	0.55	0.81	0.84	2.30	11170	1390	5	0	0	0	0	logfile

• ← previous
• Page 72 of 642
• next →