Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EVA	19996	2025-05-22	2024-03-28	2.34	2.12	2.33	1.7	0.003	0.59	0.0	0.04	9.40	0.00	2.252	3.12	0.68	2.5	97.4	0.1	0.93	0.78	0.76	3.59	1.6	0.003	0.62	0.0	0.04	14.88	0.00	2.239	3.41	1.76	2.7	97.3	0.0	0.88	1.04	0.82	0.81	3.57	22928	2913	10	0	10	0	0	logfile
✔	9EV1	19991	2025-05-22	2024-03-28	2.63	2.14	2.61	1.8	0.003	0.56	0.0	0.04	8.79	0.00	2.140	3.21	0.43	3.0	96.8	0.2	0.81	0.74	0.71	3.28	1.6	0.002	0.57	0.0	0.04	13.94	0.00	2.499	4.20	2.00	2.8	97.2	0.0	1.09	1.31	0.78	0.79	3.00	23492	3005	5	0	0	0	0	logfile
✔	9B7Z	44329	2025-05-15	2024-03-28	2.5	3.34	2.42	2.9	0.008	1.00	0.0	0.06	15.38	0.01	2.270	5.97	0.29	3.9	96.1	0.0	-1.72	0.90	0.93	3.31	2.9	0.005	1.10	2.0	0.04	15.85	0.00	2.175	6.87	2.03	2.2	97.8	0.0	0.98	1.02	0.90	0.93	2.87	12942	1708	2	0	0	0	0	logfile
✔	9EVC	19998	2025-05-10	2024-03-28	3.73	3.99	3.80	3.9	0.004	0.80	0.0	0.05	16.47	0.01	2.095	16.28	0.43	6.7	93.3	0.0	-1.61	0.62	0.71	0.24	3.9	0.003	0.78	0.0	0.04	17.45	0.00	2.331	17.19	4.75	7.1	92.9	0.0	-0.45	0.68	0.62	0.74	0.50	6507	857	2	0	1	0	0	logfile
✔	9EUQ	19980	2025-05-10	2024-03-28	2.98	3.52	3.13	3.4	0.006	0.58	0.0	0.04	18.09	0.00	2.026	14.76	0.56	4.2	95.8	0.0	0.62	0.63	0.83	2.08	3.4	0.004	0.67	0.0	0.04	18.48	0.00	1.941	12.85	4.47	4.2	95.7	0.1	0.56	0.76	0.64	0.84	2.08	6693	880	2	0	2	0	0	logfile
✔	9EUY	19989	2025-05-11	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.002	0.57	0.0	0.04	16.22	0.00	2.477	5.28	2.27	1.5	98.5	0.0	1.80	0.64	0.68	0.83	2.60	7846	984	4	0	2	0	0	logfile
✔	9B7Y	44328	2025-05-11	2024-03-28	2.51	3.13	2.67	3.0	0.004	0.58	0.0	0.04	24.66	0.00	2.333	7.45	0.00	1.2	98.8	0.0	3.53	0.79	0.84	3.28	3.0	0.005	0.53	0.0	0.03	24.80	0.00	2.493	6.17	1.17	1.3	98.7	0.0	3.51	0.97	0.79	0.85	3.50	8361	770	6	120	0	0	0	logfile
✔	9EV0	19990	2025-05-30	2024-03-28	2.38	3.22	2.42	2.8	0.010	1.79	0.0	0.12	14.39	0.02	1.484	5.26	0.30	0.5	99.5	0.0	-0.05	0.75	0.88	4.47	2.8	0.003	0.72	0.0	0.04	12.51	0.01	2.390	4.93	1.79	1.2	98.8	0.0	1.55	0.57	0.72	0.87	3.59	33540	4230	120	0	270	0	0	logfile
✔	9EUT	19981	2025-05-14	2024-03-28	2.95	3.19	—	3.1	0.005	0.76	0.0	0.05	12.33	0.01	2.158	3.55	0.56	2.2	97.8	0.0	-0.11	0.71	0.78	2.76	3.2	0.004	0.67	0.0	0.04	15.32	0.00	2.544	7.24	1.13	1.7	98.3	0.0	1.60	1.13	0.71	0.80	2.61	11456	1456	4	0	2	0	0	logfile
✔	9B80	44330	2025-05-18	2024-03-28	2.7	3.48	2.64	3.0	0.003	0.56	0.0	0.04	12.82	0.00	2.249	4.67	0.00	2.8	97.2	0.0	-0.25	0.88	0.85	2.65	3.0	0.004	0.58	0.0	0.04	14.80	0.00	2.561	3.88	0.92	3.4	96.6	0.0	0.00	0.93	0.88	0.88	2.71	16154	2192	2	0	0	0	0	logfile
✔	9EUV	19987	2025-05-22	2024-03-28	3.0	3.12	—	3.0	0.002	0.45	0.0	0.04	17.35	0.00	2.208	6.03	1.77	2.4	97.6	0.0	1.16	0.69	0.79	3.09	3.0	0.003	0.50	0.0	0.04	17.49	0.00	2.425	4.82	2.21	2.3	97.7	0.0	1.17	0.23	0.79	0.87	2.97	22291	2797	1	0	0	0	0	logfile
✔	9B78	44303	2025-05-14	2024-03-27	2.59	2.74	2.62	2.8	0.002	0.51	0.0	0.05	11.21	0.00	2.252	4.07	0.00	1.2	98.8	0.0	0.40	0.65	0.80	2.80	2.8	0.005	0.59	0.0	0.05	15.00	0.00	2.527	4.99	3.14	1.4	98.6	0.0	0.89	1.26	0.66	0.83	2.77	11814	1566	6	0	0	0	0	logfile
✔	9EUP	19979	2025-05-17	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.56	0.0	0.04	14.20	0.01	2.122	4.85	1.11	3.3	96.7	0.0	0.59	0.35	0.56	0.77	3.32	14966	965	4	0	6	0	7364	logfile
✔	9B7N	44317	2025-05-19	2024-03-27	3.02	2.66	2.88	2.8	0.006	0.90	0.0	0.06	10.45	0.00	2.077	13.36	1.05	3.0	97.0	0.0	-1.53	0.66	0.84	4.82	2.8	0.005	0.63	0.0	0.04	14.68	0.00	2.533	5.45	2.15	3.2	96.8	0.0	-0.77	0.49	0.67	0.86	4.09	18350	2323	8	0	0	0	0	logfile
✔	9B7S	44322	2025-05-12	2024-03-27	2.84	2.12	2.75	3.0	0.008	0.96	0.0	0.06	11.28	0.01	2.076	14.63	1.11	2.6	97.4	0.0	-1.60	0.68	0.88	5.48	3.0	0.006	0.66	0.0	0.04	15.01	0.00	2.545	4.47	1.31	4.4	95.6	0.0	-0.47	1.14	0.66	0.89	5.07	9273	1183	8	0	0	0	0	logfile
✔	9B7X	44327	2025-05-19	2024-03-27	2.76	2.81	2.68	2.9	0.009	0.94	3.0	0.06	10.41	0.00	1.980	13.51	0.81	2.6	97.4	0.0	-1.09	0.67	0.82	4.28	2.8	0.005	0.68	0.0	0.04	14.92	0.00	2.276	6.69	2.05	3.3	96.7	0.0	-0.71	1.09	0.65	0.84	3.80	19103	2424	9	0	1	0	0	logfile
✔	9B79	44304	2025-05-11	2024-03-27	2.71	2.95	2.77	3.0	0.003	0.60	0.0	0.05	12.08	0.00	2.229	6.42	0.00	2.4	97.6	0.0	0.94	0.58	0.72	2.58	3.0	0.005	0.72	0.0	0.05	15.57	0.00	2.441	7.68	3.54	2.4	97.6	0.0	1.08	1.76	0.63	0.79	2.22	7876	1044	4	0	0	0	0	logfile
✔	9B73	44299	2025-05-11	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.51	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.53	0.0	0.04	13.86	0.00	2.026	4.82	0.59	1.0	99.0	0.0	0.79	1.23	0.76	0.90	4.44	8016	978	9	0	15	66	0	logfile
✔	9B7W	44326	2025-05-18	2024-03-27	3.36	3.06	3.28	3.2	0.009	1.03	0.0	0.06	11.01	0.01	1.375	16.51	1.35	3.0	97.0	0.0	-2.07	0.57	0.79	4.19	3.2	0.003	0.61	0.0	0.04	15.09	0.00	2.546	6.40	2.37	3.1	96.9	0.0	-1.19	0.57	0.56	0.80	2.85	16963	2151	8	0	0	0	0	logfile
✔	9B7P	44319	2025-05-16	2024-03-27	2.98	2.81	2.94	3.0	0.017	0.99	2.0	0.06	10.70	0.00	1.693	17.00	1.69	2.4	97.6	0.0	-1.63	0.64	0.81	4.23	2.9	0.016	0.77	0.0	0.05	14.92	0.00	2.183	8.10	2.37	3.4	96.6	0.0	-0.97	0.57	0.65	0.83	3.75	14771	1865	8	0	0	0	0	logfile

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