Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YWE	39630	2025-05-10	2024-03-31	2.69	3.00	2.69	1.9	0.003	0.50	1.0	0.04	9.06	0.00	2.308	5.05	1.77	2.8	97.2	0.0	-1.47	0.95	0.91	4.14	1.8	0.003	0.56	0.0	0.04	13.27	0.00	2.574	5.83	1.59	3.6	96.4	0.0	0.39	0.50	0.96	0.93	3.68	5271	681	3	0	0	0	0	logfile
✔	8YWM	39638	2025-05-12	2024-03-31	3.2	2.59	3.23	2.3	0.004	0.71	0.0	0.05	17.37	0.01	2.216	6.11	0.23	3.7	96.2	0.1	0.21	0.73	0.71	2.17	2.3	0.003	0.65	0.0	0.04	19.90	0.00	2.472	8.94	2.28	2.8	97.1	0.1	1.20	0.79	0.74	0.77	1.88	8693	979	3	35	0	0	0	logfile
✔	9B8i	44346	2025-05-10	2024-03-30	3.18	3.67	3.32	3.6	0.004	0.59	0.0	0.05	15.42	0.01	2.302	4.20	0.96	3.0	97.0	0.0	0.37	0.48	0.82	2.20	3.6	0.003	0.59	0.0	0.04	16.18	0.00	2.148	5.37	3.04	3.4	96.6	0.0	0.70	0.32	0.48	0.82	2.19	5610	719	1	0	0	0	0	logfile
✔	9B8L	44349	2025-05-27	2024-03-30	4.65	5.94	4.68	7.9	0.012	1.27	0.0	0.06	11.85	0.00	2.219	2.54	0.13	2.3	97.6	0.0	0.28	0.85	0.62	—	9.0	0.002	0.56	0.0	0.04	12.82	0.00	2.606	7.63	0.00	3.1	96.9	0.0	0.19	1.80	0.84	0.60	—	28456	3524	2	0	0	0	0	logfile
✔	9B8H	44345	2025-05-10	2024-03-30	3.8	4.01	3.65	3.9	0.007	0.69	0.0	0.05	14.22	0.01	2.324	5.33	0.42	4.6	95.4	0.0	0.71	0.69	0.80	1.07	3.9	0.003	0.62	0.0	0.04	15.02	0.00	2.501	7.55	2.31	5.6	94.4	0.0	0.56	0.46	0.71	0.83	1.94	4630	587	2	0	4	0	0	logfile
✔	8YW8	39625	2025-05-09	2024-03-30	3.17	3.43	3.08	3.4	0.013	1.10	0.0	0.06	16.72	0.00	2.342	2.40	0.00	0.9	99.1	0.0	1.43	0.55	0.78	2.44	3.4	0.003	0.47	0.0	0.04	16.34	0.00	2.326	3.51	0.38	0.9	99.1	0.0	3.07	0.34	0.48	0.79	2.44	2697	329	5	0	2	0	0	logfile
✔	9B8J	44347	2025-05-11	2024-03-30	3.4	2.22	3.37	2.1	0.003	0.48	0.0	0.04	11.29	0.00	2.233	4.79	0.84	4.1	95.9	0.0	-0.62	0.71	0.76	3.47	2.1	0.004	0.59	0.0	0.04	14.61	0.00	2.494	5.66	3.47	4.1	95.9	0.0	-0.81	0.28	0.74	0.77	2.76	7610	961	10	0	7	0	0	logfile
✔	8YWA	39627	2025-05-18	2024-03-30	3.14	3.36	3.16	3.4	0.004	0.61	0.0	0.04	12.54	0.01	2.184	10.12	0.14	5.9	93.9	0.2	1.18	0.51	0.56	1.26	3.3	0.004	0.60	0.0	0.04	14.70	0.00	2.218	7.01	1.94	5.3	94.6	0.1	1.03	0.96	0.59	0.72	2.67	16619	1486	11	0	9	0	6751	logfile
✔	8YW9	39626	2025-05-09	2024-03-30	3.01	3.25	3.02	3.3	0.010	0.95	0.0	0.06	16.93	0.00	2.292	6.22	0.81	3.1	96.9	0.0	-0.99	0.52	0.80	3.49	3.3	0.004	0.50	0.0	0.04	16.45	0.00	2.395	4.33	1.08	2.4	97.6	0.0	1.79	0.68	0.48	0.83	3.53	3709	458	5	0	1	0	0	logfile
✔	9B8K	44348	2025-05-16	2024-03-30	2.96	2.30	3.08	2.1	0.011	1.26	0.0	0.06	11.29	0.00	2.047	1.95	0.13	2.4	97.3	0.3	0.90	0.71	0.65	2.50	2.0	0.003	0.68	0.0	0.04	15.28	0.01	2.350	7.34	1.48	4.2	95.7	0.1	-0.01	0.68	0.71	0.66	2.06	14231	1761	1	0	0	0	0	logfile
✔	8YVU	39614	2025-05-09	2024-03-29	3.9	4.30	3.84	4.2	0.003	0.71	0.0	0.04	13.76	0.00	2.277	12.74	0.00	4.1	95.5	0.4	1.38	0.50	0.63	0.56	4.2	0.003	0.71	0.0	0.04	16.38	0.00	2.599	9.64	2.83	4.3	95.5	0.2	1.55	0.51	0.53	0.66	-0.19	4216	530	10	0	2	0	0	logfile
✔	8YW3	39621	2025-05-12	2024-03-29	2.68	3.44	2.76	3.3	0.004	0.66	0.0	0.04	17.97	0.00	2.163	11.08	7.83	3.2	96.8	0.0	0.63	0.66	0.77	2.00	3.3	0.004	0.64	0.0	0.04	17.92	0.00	2.510	7.51	3.76	3.7	96.3	0.0	0.71	0.29	0.65	0.77	2.26	9231	1160	6	0	0	0	0	logfile
✔	8YW5	39623	2025-05-12	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.003	0.55	0.0	0.04	14.93	0.00	2.532	4.16	3.03	4.1	95.9	0.0	1.40	1.13	0.62	0.81	3.38	8937	1157	6	0	0	0	0	logfile
✔	9B87	44334	2025-05-13	2024-03-29	2.65	2.86	2.66	2.9	0.009	1.10	2.0	0.07	14.68	0.01	2.266	3.35	0.62	2.6	97.4	0.0	-0.97	0.61	0.65	1.39	2.9	0.003	0.63	0.0	0.04	17.31	0.00	2.538	6.24	3.18	2.3	97.7	0.0	0.44	1.67	0.61	0.70	2.22	10912	1352	4	0	0	0	0	logfile
✔	8YW4	39622	2025-05-12	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.004	0.62	0.0	0.04	18.54	0.00	2.519	6.94	3.58	5.3	94.5	0.2	0.65	1.19	0.63	0.83	1.67	8619	1082	6	0	0	0	0	logfile
✔	8YVY	39616	2025-05-30	2024-03-29	3.02	3.38	3.08	3.4	0.008	0.97	0.0	0.06	15.12	0.01	2.062	8.37	0.03	7.0	92.8	0.2	-1.25	0.37	0.54	0.24	3.3	0.003	0.65	0.0	0.04	15.20	0.00	2.328	5.69	3.01	5.3	94.6	0.1	-0.60	1.21	0.52	0.85	2.51	33424	4276	28	0	36	0	0	logfile
✔	9B8A	44336	2025-05-10	2024-03-29	3.4	3.63	3.33	3.5	0.004	0.64	0.0	0.04	13.81	0.00	2.205	3.10	1.11	1.6	98.4	0.0	1.09	0.70	0.83	2.64	3.6	0.003	0.56	0.0	0.04	15.38	0.00	2.536	4.17	2.67	3.1	96.9	0.0	0.99	1.15	0.70	0.84	2.76	4320	554	1	0	0	0	0	logfile
✔	9EV1	19991	2025-05-22	2024-03-28	2.63	2.14	2.61	1.8	0.003	0.56	0.0	0.04	8.79	0.00	2.140	3.21	0.43	3.0	96.8	0.2	0.81	0.74	0.71	3.28	1.6	0.002	0.57	0.0	0.04	13.94	0.00	2.499	4.20	2.00	2.8	97.2	0.0	1.09	1.31	0.78	0.79	3.00	23492	3005	5	0	0	0	0	logfile
✔	9EUQ	19980	2025-05-10	2024-03-28	2.98	3.52	3.13	3.4	0.006	0.58	0.0	0.04	18.09	0.00	2.026	14.76	0.56	4.2	95.8	0.0	0.62	0.63	0.83	2.08	3.4	0.004	0.67	0.0	0.04	18.48	0.00	1.941	12.85	4.47	4.2	95.7	0.1	0.56	0.76	0.64	0.84	2.08	6693	880	2	0	2	0	0	logfile
✔	9EVB	19997	2025-05-23	2024-03-28	2.38	2.52	2.39	2.5	0.006	1.05	0.0	0.06	11.68	0.01	2.200	5.50	1.36	3.7	96.0	0.3	-0.03	0.65	0.83	2.59	2.5	0.002	0.59	0.0	0.04	14.19	0.00	2.598	3.94	1.64	2.6	97.4	0.0	1.17	0.82	0.66	0.85	2.94	24090	3005	15	0	35	205	0	logfile

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