Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YX6	39648	2025-05-15	2024-04-02	2.9	3.57	2.95	3.4	0.007	0.55	0.0	0.04	8.16	0.00	1.968	7.32	0.00	0.3	99.7	0.0	2.41	0.64	0.83	4.03	3.4	0.003	0.57	0.0	0.04	13.41	0.00	2.024	7.70	1.40	1.4	98.6	0.0	2.07	0.52	0.57	0.80	3.51	13080	1620	15	0	25	0	0	logfile
✔	8YX7	39649	2025-05-15	2024-04-02	2.8	3.51	2.95	3.3	0.007	0.58	0.0	0.04	10.87	0.00	2.227	7.55	0.00	0.9	99.1	0.0	2.69	0.62	0.82	3.35	3.3	0.003	0.58	0.0	0.04	14.48	0.00	2.612	7.63	2.10	1.9	98.1	0.0	2.02	0.57	0.56	0.79	3.68	13070	1620	15	0	15	0	0	logfile
✔	9B9J	44386	2025-05-18	2024-04-02	2.6	3.11	2.64	3.0	0.005	0.74	0.0	0.05	19.52	0.00	2.049	2.70	0.34	2.9	97.0	0.1	0.15	0.70	0.77	4.32	3.0	0.003	0.58	0.0	0.04	14.65	0.00	2.037	2.40	0.90	2.6	97.3	0.1	0.26	0.61	0.73	0.81	3.90	16334	1055	16	0	39	0	7817	logfile
✔	8YWX	39646	2025-05-10	2024-04-01	3.4	3.68	3.37	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.5	0.004	0.82	0.0	0.05	14.70	0.00	2.271	8.35	3.18	5.8	94.2	0.0	-1.32	2.30	0.68	0.75	1.42	4803	623	3	0	0	0	0	logfile
✔	8YWT	39644	2025-05-16	2024-04-01	2.8	3.14	2.87	3.2	0.013	1.93	10.0	0.09	14.34	0.02	2.228	1.55	3.36	2.1	97.6	0.3	-1.45	0.50	0.68	1.86	3.2	0.006	0.69	0.0	0.04	16.18	0.01	2.570	4.54	2.01	2.7	97.3	0.0	2.00	1.02	0.67	0.87	2.32	13986	1895	24	0	0	70	0	logfile
✔	9B94	44368	2025-05-27	2024-04-01	3.1	3.87	2.80	3.1	0.004	0.49	0.0	0.03	10.72	0.00	2.194	3.94	0.82	3.7	96.3	0.0	2.22	0.70	0.90	2.98	3.1	0.005	0.54	0.0	0.04	12.45	0.00	2.221	4.57	0.99	3.0	96.9	0.1	2.37	1.23	0.70	0.90	2.49	29516	3864	8	0	4	0	0	logfile
✔	9B8W	44360	2025-05-28	2024-04-01	3.1	4.30	3.17	3.2	0.009	0.58	0.0	0.03	11.71	0.00	2.020	6.65	0.00	2.6	97.4	0.0	1.73	0.69	0.88	2.44	3.2	0.002	0.50	0.0	0.04	12.70	0.00	2.357	6.07	0.77	2.8	97.2	0.0	2.42	0.88	0.69	0.89	2.26	30256	3972	8	0	8	0	0	logfile
✔	8YWW	39645	2025-05-29	2024-04-01	2.7	2.97	2.79	2.9	0.016	1.90	92.0	0.08	13.25	0.01	0.602	15.05	0.77	4.5	95.3	0.2	-0.39	0.65	0.66	1.46	2.9	0.003	0.63	0.0	0.04	15.17	0.00	2.229	6.58	1.92	4.5	95.4	0.0	-0.27	0.77	0.74	0.84	2.24	31649	4177	8	0	0	0	0	logfile
✔	9B93	44367	2025-05-27	2024-04-01	3.1	3.90	2.94	3.5	0.011	0.51	0.0	0.03	15.66	0.00	2.197	6.34	0.07	2.2	97.8	0.0	1.89	0.73	0.89	2.81	3.4	0.005	0.54	0.0	0.04	16.05	0.00	2.381	5.85	2.51	2.7	97.3	0.0	2.78	0.87	0.71	0.88	2.10	29808	3936	4	0	0	0	0	logfile
✔	9B8X	44361	2025-05-11	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.50	0.0	0.04	12.43	0.00	2.344	4.00	0.67	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.87	7564	993	2	0	2	0	0	logfile
✔	9B92	44366	2025-05-28	2024-04-01	3.5	4.35	3.55	3.9	0.012	0.73	0.0	0.04	11.40	0.00	2.118	5.81	0.65	4.8	95.2	0.0	2.12	0.70	0.86	2.16	3.9	0.003	0.56	0.0	0.03	13.47	0.00	2.262	5.50	0.89	3.4	96.5	0.1	2.56	0.41	0.70	0.86	1.63	29948	3960	8	0	4	0	0	logfile
✔	9B8Y	44362	2025-05-27	2024-04-01	3.2	3.89	3.18	3.7	0.004	0.47	0.0	0.03	10.41	0.00	2.120	4.02	0.54	4.3	95.7	0.0	2.44	0.68	0.86	2.86	3.7	0.003	0.57	0.0	0.04	13.67	0.00	2.365	5.79	2.51	3.0	97.0	0.0	2.17	0.55	0.67	0.87	1.99	29980	3912	8	0	12	0	0	logfile
✔	9B8Z	44363	2025-05-11	2024-04-01	3.4	4.06	3.35	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.355	5.66	2.03	2.6	97.4	0.0	2.18	0.53	0.69	0.87	1.92	7509	978	2	0	3	0	0	logfile
✔	9B91	44365	2025-05-11	2024-04-01	3.3	4.21	3.19	3.7	0.008	0.60	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.003	0.57	0.0	0.04	13.74	0.00	2.334	7.28	2.62	2.8	97.2	0.0	2.09	0.61	0.60	0.86	2.24	7511	993	2	0	3	0	0	logfile
✔	9B90	44364	2025-05-27	2024-04-01	3.4	4.22	3.06	3.7	0.010	0.55	0.0	0.04	10.68	0.00	2.154	6.68	0.42	3.4	96.6	0.0	1.44	0.68	0.85	2.70	3.7	0.003	0.62	0.0	0.04	13.17	0.00	2.358	7.42	1.43	2.8	97.2	0.0	2.35	1.26	0.67	0.85	1.62	29720	3928	8	0	12	0	0	logfile
✔	9B8Q	44352	2025-05-14	2024-03-31	3.8	4.19	4.04	4.1	0.005	0.62	0.0	0.04	16.29	0.00	2.034	10.39	3.66	4.3	95.7	0.1	2.27	0.54	0.70	0.62	4.2	0.003	0.57	0.0	0.03	17.42	0.00	2.383	7.15	5.00	2.3	97.6	0.1	3.83	0.55	0.53	0.70	0.62	12348	1886	9	0	0	0	0	logfile
✔	9B8R	44356	2025-05-12	2024-03-31	3.5	3.75	3.62	3.7	0.016	1.86	3.0	0.11	15.44	0.02	2.205	9.34	2.06	4.3	94.6	1.1	-1.71	0.62	0.56	1.83	3.7	0.003	0.75	0.0	0.04	17.41	0.00	2.494	9.24	2.26	2.2	97.8	0.0	1.10	1.33	0.70	0.76	1.69	9425	1119	4	22	1	0	0	logfile
✔	8YWH	39633	2025-05-13	2024-03-31	2.97	2.86	2.92	3.1	0.005	0.75	0.0	0.04	24.04	0.00	2.205	15.09	6.22	3.1	96.9	0.0	0.08	0.74	0.80	2.59	3.0	0.003	0.62	0.0	0.04	23.25	0.00	2.511	9.61	4.66	3.1	96.9	0.0	0.70	1.13	0.72	0.77	2.80	9957	845	4	141	0	0	0	logfile
✔	8YWG	39632	2025-05-11	2024-03-31	3.28	2.63	3.23	2.3	0.003	0.66	0.0	0.04	14.30	0.00	2.255	5.39	0.24	4.7	95.2	0.1	0.59	0.76	0.77	2.62	2.3	0.004	0.65	0.0	0.04	16.88	0.00	2.448	6.96	3.01	5.3	94.7	0.0	0.84	0.85	0.77	0.80	2.20	7707	963	1	0	0	0	0	logfile
✔	8YWi	39634	2025-05-12	2024-03-31	2.7	2.38	3.00	2.1	0.003	0.65	0.0	0.04	16.77	0.01	2.209	4.99	0.11	4.8	94.4	0.8	0.94	0.80	0.80	3.23	2.1	0.004	0.94	1.0	0.04	18.48	0.00	2.022	5.28	1.93	5.4	93.9	0.7	0.95	0.36	0.82	0.83	2.71	8710	980	5	34	2	0	0	logfile

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