Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YR0	39532	2025-05-22	2024-03-20	3.06	3.79	3.09	3.5	0.004	0.67	0.0	0.04	18.96	0.01	2.200	5.40	0.13	2.2	97.8	0.0	0.91	0.78	0.84	1.02	3.5	0.002	0.54	0.0	0.04	16.18	0.00	2.459	4.31	2.56	2.2	97.8	0.0	1.89	0.58	0.80	0.89	1.28	23128	3084	6	0	6	0	0	logfile
✔	8YQX	39509	2025-05-10	2024-03-20	2.97	3.17	3.00	3.2	0.003	0.52	0.0	0.04	16.27	0.00	2.198	8.03	0.72	3.7	96.3	0.0	-0.18	0.56	0.85	2.68	3.2	0.005	0.60	0.0	0.05	16.99	0.00	2.451	6.91	3.33	4.2	95.8	0.0	-0.15	0.31	0.55	0.86	2.39	6167	766	3	0	0	0	0	logfile
✔	8YQZ	39511	2025-05-27	2024-03-20	2.78	2.82	2.70	5.9	0.009	0.79	0.0	0.05	16.64	0.01	1.986	7.76	2.52	3.6	96.4	0.0	-1.05	0.09	-0.06	0.02	2.8	0.003	0.81	0.0	0.05	17.60	0.01	2.127	11.79	1.33	4.8	95.2	0.0	-1.07	1.60	0.48	0.54	0.97	29943	3717	14	15	5	0	0	logfile
✔	9B3Y	44160	2025-05-20	2024-03-20	2.7	3.24	2.84	3.1	0.012	1.79	4.0	0.09	13.70	0.01	2.499	1.77	0.19	2.0	98.0	0.0	-1.19	0.59	0.80	4.61	3.1	0.002	0.52	0.0	0.04	15.80	0.00	2.571	4.79	1.48	1.2	98.8	0.0	2.00	0.53	0.55	0.76	3.69	19744	2424	8	0	8	0	0	logfile
✔	9B4F	44179	2025-05-10	2024-03-20	3.27	3.55	3.32	3.6	0.003	0.57	2.0	0.04	12.09	0.00	2.255	7.44	1.68	9.1	90.9	0.0	-2.07	0.58	0.80	3.31	3.6	0.002	0.51	0.0	0.04	14.30	0.00	2.563	4.66	2.52	7.9	92.1	0.0	1.15	0.83	0.50	0.77	2.94	5612	670	4	0	2	0	0	logfile
✔	9B4L	44184	2025-05-12	2024-03-20	3.1	3.48	2.66	3.5	0.039	0.95	0.0	0.06	15.50	0.01	2.292	15.36	7.46	10.7	89.3	0.0	-2.54	0.46	0.79	4.63	3.4	0.007	0.80	0.0	0.05	16.88	0.00	2.444	9.22	3.98	9.0	91.0	0.0	-2.50	1.15	0.46	0.84	4.20	8652	924	42	0	174	0	0	logfile
✔	9B3U	44156	2025-05-20	2024-03-20	2.4	2.75	2.47	2.7	0.012	1.73	0.0	0.09	13.69	0.01	2.455	3.61	0.19	2.0	98.0	0.0	-0.45	0.67	0.85	4.80	2.7	0.002	0.50	0.0	0.04	16.00	0.00	2.432	3.79	1.04	0.9	99.1	0.0	2.45	0.59	0.64	0.85	4.09	19842	2427	8	0	8	0	0	logfile
✔	9B4i	44181	2025-05-09	2024-03-20	3.6	3.70	2.27	3.8	0.003	0.77	0.0	2.13	17.88	0.00	2.285	14.32	0.00	0.0	0.0	0.0	—	0.58	0.74	—	3.8	0.090	5.23	242.0	0.26	28.55	0.01	1.899	61.40	0.00	0.0	0.0	0.0	—	2.15	0.59	0.86	—	3720	0	60	0	420	0	0	logfile
✔	9B40	44163	2025-05-29	2024-03-20	2.9	3.29	2.95	3.2	0.004	0.72	0.0	0.05	18.16	0.01	2.209	3.78	3.83	4.1	95.8	0.1	-0.37	0.46	0.87	2.94	3.1	0.004	0.56	0.0	0.04	18.15	0.00	2.534	4.84	3.52	3.8	96.2	0.0	0.12	1.38	0.47	0.89	2.94	32946	4325	19	0	0	0	0	logfile
✔	9B3T	44155	2025-05-17	2024-03-20	3.53	4.31	3.65	4.1	0.003	0.62	0.0	0.04	18.61	0.00	2.215	11.95	2.81	3.3	96.7	0.0	0.30	0.83	0.76	1.34	4.1	0.003	0.73	0.0	0.04	18.40	0.00	2.286	10.34	3.58	3.1	96.9	0.0	2.26	1.48	0.84	0.82	1.03	16389	2049	8	0	0	0	0	logfile
✔	9EQ2	19894	2025-05-16	2024-03-20	3.68	4.41	3.57	3.9	0.007	1.03	0.0	0.05	17.34	0.01	2.291	2.79	0.25	2.8	97.2	0.0	-0.26	0.77	0.77	1.84	3.9	0.003	0.65	0.0	0.04	17.27	0.00	2.301	7.57	1.75	2.1	97.9	0.0	1.78	2.13	0.82	0.87	1.57	14615	1876	10	0	3	0	0	logfile
✔	9B4J	44182	2025-05-09	2024-03-20	3.5	3.72	2.36	3.9	0.007	0.99	0.0	2.22	17.17	0.00	2.202	16.47	0.00	0.0	0.0	0.0	—	0.59	0.82	—	3.7	0.094	5.43	308.0	0.27	26.26	0.01	1.874	71.37	0.00	0.0	0.0	0.0	—	2.18	0.63	0.89	—	3600	0	60	0	420	0	0	logfile
✔	9B3M	44145	2025-05-09	2024-03-19	3.21	3.37	3.16	3.3	0.004	0.76	1.0	0.04	16.77	0.00	2.215	12.22	2.33	1.1	98.9	0.0	2.89	0.61	0.83	1.19	3.3	0.003	0.62	0.0	0.04	17.01	0.00	2.568	10.91	6.61	1.4	98.6	0.0	3.21	0.28	0.61	0.84	1.28	2669	365	1	0	0	0	0	logfile
✔	9B3F	44136	2025-05-25	2024-03-19	3.54	4.37	—	2.3	0.002	0.51	0.0	0.04	14.01	0.00	1.851	7.64	0.00	2.2	97.8	0.0	1.79	0.83	0.71	0.94	2.3	0.003	0.52	0.0	0.04	15.42	0.00	2.430	8.76	0.79	3.2	96.8	0.0	2.04	0.72	0.84	0.73	0.90	26849	1668	5	0	0	0	13441	logfile
✔	8YQQ	39502	2025-05-10	2024-03-19	3.95	2.96	3.86	3.4	0.021	1.32	0.0	0.07	17.14	0.04	1.447	16.88	8.03	9.9	87.3	2.8	-3.12	0.87	0.83	2.44	3.4	0.004	0.78	0.0	0.05	15.58	0.00	2.016	8.19	2.44	6.0	94.0	0.0	-1.35	0.97	0.88	0.84	2.36	5141	649	4	0	6	0	0	logfile
✔	9B3K	44143	2025-05-10	2024-03-19	2.56	2.75	2.56	2.9	0.004	0.59	0.0	0.04	17.05	0.00	2.195	8.40	4.35	3.6	96.4	0.0	1.63	0.69	0.85	2.99	2.9	0.005	0.64	0.0	0.04	17.01	0.00	2.500	7.08	3.45	3.5	96.5	0.0	1.62	0.84	0.68	0.87	3.10	6063	797	3	0	0	0	0	logfile
✔	9B3i	44141	2025-05-17	2024-03-19	2.88	3.47	—	3.0	0.006	0.78	0.0	0.05	13.83	0.00	1.769	10.80	0.30	1.8	98.2	0.0	0.61	0.82	0.73	2.51	3.1	0.004	0.82	0.0	0.04	15.88	0.00	1.862	11.64	1.97	1.7	98.3	0.0	1.24	0.99	0.81	0.80	2.13	14951	1854	7	0	2	0	0	logfile
✔	9B3L	44144	2025-05-09	2024-03-19	3.25	3.40	3.12	3.3	0.003	0.54	0.0	0.04	15.96	0.00	2.274	9.17	0.40	2.6	97.4	0.0	2.14	0.61	0.84	1.47	3.4	0.004	0.66	0.0	0.04	16.28	0.00	2.550	9.36	6.32	2.3	97.7	0.0	2.24	0.41	0.60	0.84	1.68	2623	358	1	0	0	0	0	logfile
✔	9B3H	44139	2025-05-10	2024-03-19	4.0	4.35	3.53	4.0	0.004	0.73	0.0	0.05	14.64	0.00	2.133	16.50	0.15	1.4	98.6	0.0	1.02	0.87	0.83	—	4.0	0.006	0.70	0.0	0.04	15.18	0.00	2.486	11.37	1.69	2.0	98.0	0.0	0.74	0.37	0.89	0.86	—	5979	747	4	0	5	0	0	logfile
✔	9B3D	44135	2025-05-23	2024-03-19	3.41	4.16	3.57	3.8	0.005	0.88	0.0	0.05	15.33	0.01	2.099	1.98	0.00	3.7	96.2	0.1	-3.30	0.79	0.76	1.16	3.8	0.003	0.72	0.0	0.04	15.98	0.00	1.883	9.39	0.98	3.5	96.5	0.1	0.50	0.79	0.80	0.80	1.22	23621	2967	14	0	12	0	0	logfile

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