Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B3D	44135	2025-05-23	2024-03-19	3.41	4.16	3.57	3.8	0.005	0.88	0.0	0.05	15.33	0.01	2.099	1.98	0.00	3.7	96.2	0.1	-3.30	0.79	0.76	1.16	3.8	0.003	0.72	0.0	0.04	15.98	0.00	1.883	9.39	0.98	3.5	96.5	0.1	0.50	0.79	0.80	0.80	1.22	23621	2967	14	0	12	0	0	logfile
✔	9B33	44124	2025-05-09	2024-03-18	4.07	4.25	3.97	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.03	0.0	0.06	12.53	0.01	1.987	20.49	0.00	22.3	76.4	1.3	-4.67	1.20	0.68	0.68	—	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2025-05-16	2024-03-18	3.4	3.76	3.54	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.244	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.8	0.003	0.75	0.0	0.04	14.31	0.00	2.455	9.09	1.81	10.0	89.9	0.1	-0.75	0.81	0.67	0.81	1.71	14132	1780	8	0	0	0	0	logfile
✔	9B3A	44133	2025-05-09	2024-03-18	3.2	2.71	2.66	3.2	0.008	0.43	0.0	0.06	9.13	0.00	2.430	2.97	0.00	0.0	100.0	0.0	-1.00	0.51	0.80	5.51	3.2	0.034	0.52	0.0	0.06	14.61	0.00	2.522	5.64	4.00	0.3	99.7	0.0	-1.09	1.03	0.48	0.81	4.20	3345	420	45	0	45	0	0	logfile
✔	9B3C	44134	2025-05-09	2024-03-18	2.95	2.83	2.73	3.1	0.008	0.64	0.0	0.07	10.58	0.01	2.367	3.22	0.00	0.0	100.0	0.0	0.24	0.49	0.84	5.25	3.0	0.030	0.53	0.0	0.07	16.37	0.00	2.413	7.06	1.94	0.0	100.0	0.0	0.12	1.07	0.46	0.85	4.88	3270	420	45	0	45	0	0	logfile
✔	9B38	44131	2025-05-22	2024-03-18	3.36	3.64	3.43	3.6	0.008	1.38	0.0	0.08	20.14	0.01	2.270	4.66	0.76	9.0	90.6	0.4	-5.67	0.71	0.77	2.51	3.6	0.004	0.84	0.0	0.05	15.00	0.00	2.445	10.35	1.47	8.9	91.0	0.1	-1.58	2.82	0.76	0.82	2.27	22670	2720	26	0	74	0	0	logfile
✔	8YPT	39493	2025-05-22	2024-03-18	3.05	3.26	3.06	3.3	0.003	0.59	0.0	0.05	15.68	0.00	2.167	7.27	0.80	1.9	98.1	0.0	0.24	0.68	0.84	3.33	3.3	0.003	0.52	0.0	0.04	16.21	0.00	2.536	4.47	3.23	2.4	97.6	0.0	0.32	1.21	0.72	0.87	3.52	23068	2894	5	0	0	0	0	logfile
✔	9B34	44125	2025-05-09	2024-03-18	3.58	3.87	3.56	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.004	1.04	0.0	0.05	16.71	0.01	2.058	17.26	4.20	23.2	75.7	1.1	-4.30	1.62	0.71	0.72	0.92	3619	474	4	0	4	0	0	logfile
✔	9B2Z	44118	2025-05-10	2024-03-18	2.83	3.06	2.86	3.0	0.007	0.82	0.0	0.05	15.83	0.01	2.200	8.50	0.18	3.4	96.6	0.0	-0.65	0.64	0.77	2.74	3.0	0.003	0.58	0.0	0.04	16.57	0.00	1.990	6.83	0.88	3.3	96.7	0.0	0.79	0.34	0.64	0.78	1.79	5506	711	4	0	4	0	0	logfile
✔	9B39	44132	2025-05-26	2024-03-18	3.84	4.26	4.00	4.0	0.009	1.58	0.0	0.07	17.94	0.01	2.184	7.62	0.44	15.3	83.2	1.5	-5.60	0.71	0.80	1.55	4.0	0.003	0.97	0.0	0.05	14.49	0.00	2.421	12.95	1.43	12.9	86.7	0.4	-2.23	1.57	0.71	0.80	1.23	27522	3372	22	0	58	0	0	logfile
✔	8YPU	39494	2025-05-22	2024-03-18	2.97	3.16	2.96	3.1	0.006	0.68	3.0	0.05	16.03	0.01	2.065	9.57	0.25	2.7	97.3	0.0	-0.23	0.77	0.86	3.78	3.1	0.004	0.71	1.0	0.04	16.54	0.00	2.532	5.69	2.87	3.1	96.9	0.0	0.12	0.22	0.75	0.88	3.54	22476	2820	4	0	0	0	0	logfile
✔	9B31	44120	2025-05-25	2024-03-18	3.2	3.83	—	3.4	0.004	0.54	0.0	0.04	13.35	0.00	1.918	5.58	0.00	1.7	98.3	0.0	1.78	0.84	0.75	1.87	3.4	0.003	0.48	0.0	0.03	14.76	0.00	2.332	4.99	0.59	2.6	97.4	0.0	2.62	1.33	0.86	0.80	1.38	27078	1682	5	0	0	0	13549	logfile
✔	9B2X	44117	2025-05-13	2024-03-17	3.28	3.63	3.34	3.6	0.003	0.65	0.0	0.05	15.74	0.00	2.199	3.98	0.47	6.5	93.5	0.0	-1.06	0.71	0.81	3.26	3.6	0.002	0.59	0.0	0.05	14.79	0.00	2.540	3.52	0.47	6.3	93.7	0.0	-0.36	1.39	0.72	0.83	2.89	10860	1386	6	0	6	0	0	logfile
✔	9B2S	44113	2025-05-17	2024-03-16	3.01	3.43	3.00	3.3	0.005	0.62	0.0	0.04	26.77	0.00	2.134	7.30	0.52	3.9	96.1	0.0	1.45	0.87	0.88	1.61	3.3	0.005	0.59	0.0	0.04	26.79	0.00	2.460	5.06	3.31	3.8	96.2	0.0	1.69	1.00	0.87	0.90	1.59	15497	1140	11	314	0	0	0	logfile
✔	9B2U	44115	2025-05-09	2024-03-16	3.64	3.89	3.64	3.9	0.003	0.78	0.0	0.04	17.96	0.00	2.144	14.41	0.67	4.3	95.7	0.0	-0.49	0.45	0.58	0.86	3.9	0.003	0.64	0.0	0.04	18.33	0.00	2.517	9.73	4.33	4.9	95.1	0.0	-0.45	0.72	0.57	0.68	1.32	2672	333	2	0	0	0	0	logfile
✔	8YPB	39475	2025-05-15	2024-03-16	2.45	2.66	2.45	2.7	0.023	2.23	1.0	0.22	20.95	0.03	1.831	14.19	2.03	0.6	99.4	0.0	3.91	0.68	0.80	3.34	2.7	0.003	0.75	0.0	0.04	21.00	0.00	2.134	11.99	2.56	0.0	100.0	0.0	4.81	0.22	0.68	0.81	3.47	13286	1330	56	0	56	0	0	logfile
✔	8YPD	39477	2025-05-14	2024-03-16	2.78	3.01	2.78	3.0	0.023	2.27	7.0	0.23	19.28	0.03	2.344	12.10	0.49	0.0	100.0	0.0	0.78	0.71	0.84	4.03	3.0	0.003	0.73	0.0	0.04	20.27	0.00	2.530	8.89	0.39	0.0	100.0	0.0	4.12	0.25	0.70	0.86	3.27	12292	1190	56	0	42	0	0	logfile
✔	9B2T	44114	2025-05-16	2024-03-16	2.99	3.43	2.99	3.3	0.004	0.58	0.0	0.03	27.11	0.00	2.131	7.87	2.24	2.5	97.5	0.0	1.58	0.85	0.87	1.93	3.3	0.004	0.61	0.0	0.04	27.11	0.00	2.504	6.79	1.71	3.0	97.0	0.0	1.62	2.21	0.87	0.89	1.67	15194	1098	11	314	0	0	0	logfile
✔	9B2M	44112	2025-05-18	2024-03-15	3.09	3.32	3.10	3.3	0.023	1.91	3.0	0.12	9.98	0.01	1.499	3.03	0.26	2.1	97.9	0.0	0.77	0.70	0.70	2.48	3.3	0.004	0.80	0.0	0.05	14.73	0.00	2.445	15.31	2.58	4.8	95.2	0.0	-0.04	1.49	0.71	0.74	1.97	17412	2187	15	0	15	0	0	logfile
✔	9B2K	44111	2025-05-13	2024-03-15	3.67	4.75	3.71	3.6	0.004	0.87	0.0	0.04	19.38	0.01	2.137	16.77	1.05	6.8	93.0	0.2	-1.47	0.72	0.42	0.31	3.7	0.003	0.69	0.0	0.04	19.56	0.00	2.473	10.27	1.79	5.7	94.3	0.0	-0.57	3.04	0.86	0.71	0.76	10242	1062	3	74	0	0	0	logfile

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