Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EoE	19852	2025-05-09	2024-03-14	2.3	2.15	2.24	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	9B27	44099	2025-05-23	2024-03-14	3.51	4.14	3.65	3.8	0.004	0.82	0.0	0.05	15.44	0.01	1.519	2.38	0.23	3.7	96.1	0.1	-3.27	0.79	0.79	1.00	3.7	0.004	0.69	0.0	0.04	15.99	0.00	1.888	6.75	0.81	4.1	95.9	0.0	0.91	1.67	0.80	0.80	0.87	23828	2991	14	0	12	0	0	logfile
✔	9EoH	19855	2025-05-09	2024-03-14	2.8	3.08	2.70	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.005	0.81	0.0	0.05	17.65	0.00	2.547	6.32	4.87	5.3	94.7	0.0	-2.78	1.36	0.42	0.88	5.91	3414	444	6	0	0	0	0	logfile
✔	9B23	44095	2025-05-10	2024-03-14	3.2	4.35	3.32	3.8	0.003	0.59	0.0	0.04	14.70	0.01	1.981	10.54	0.39	2.8	97.2	0.0	0.97	0.81	0.69	0.94	3.8	0.003	0.68	0.0	0.04	16.83	0.00	2.481	9.57	1.35	2.5	97.5	0.0	1.26	1.31	0.82	0.71	1.29	4670	568	2	0	0	0	0	logfile
✔	9B2C	44103	2025-05-10	2024-03-14	3.0	3.28	2.99	3.4	0.011	1.64	7.0	0.09	13.71	0.02	2.392	3.17	3.41	2.6	96.6	0.8	-0.08	0.71	0.78	5.61	3.4	0.003	0.63	0.0	0.04	13.28	0.00	2.580	4.93	1.42	2.9	96.9	0.2	-0.24	1.10	0.64	0.78	4.87	4596	657	6	0	4	0	0	logfile
✔	9EoG	19854	2025-05-09	2024-03-14	3.0	3.00	2.80	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.006	0.82	0.0	0.05	15.30	0.00	2.534	9.36	1.24	5.8	94.2	0.0	-1.89	1.09	0.37	0.88	3.53	3522	462	6	0	0	0	0	logfile
✔	9Eo9	19849	2025-05-09	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.006	0.87	0.0	0.05	15.00	0.00	2.494	4.14	2.94	6.0	94.0	0.0	-2.85	1.24	0.29	0.79	3.58	1190	154	2	0	0	0	0	logfile
✔	9Eo4	19845	2025-05-12	2024-03-14	2.66	2.89	2.69	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.93	0.00	2.082	4.90	0.66	1.3	98.7	0.0	1.60	1.09	0.51	0.85	4.48	8781	546	2	0	7	4	4322	logfile
✔	9Eo7	19846	2025-05-09	2024-03-14	2.8	2.99	2.46	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.002	0.54	0.0	0.05	13.60	0.01	2.543	6.71	2.94	1.3	98.7	0.0	-1.78	0.74	0.27	0.87	3.36	595	77	1	0	0	0	0	logfile
✔	8YoY	39460	2025-05-10	2024-03-14	3.21	4.39	3.37	4.0	0.003	0.50	0.0	0.04	14.42	0.00	2.189	7.69	0.00	3.7	96.3	0.0	-1.35	0.72	0.43	0.88	3.9	0.004	0.78	0.0	0.05	15.95	0.00	2.458	20.24	4.35	6.5	93.4	0.2	-1.22	1.51	0.85	0.74	0.62	5081	653	2	0	0	0	0	logfile
✔	9EoA	19850	2025-05-14	2024-03-14	3.27	2.45	3.26	2.1	0.006	0.86	0.0	0.05	19.33	0.00	2.201	18.32	3.84	3.2	96.8	0.0	0.74	0.73	0.74	2.00	2.2	0.005	0.90	1.0	0.04	20.24	0.00	2.152	16.89	2.64	3.1	96.9	0.0	0.72	1.37	0.74	0.74	1.66	11807	1337	7	63	0	0	0	logfile
✔	9B2D	44104	2025-05-16	2024-03-14	2.4	2.49	2.31	2.5	0.010	0.69	0.0	0.04	20.73	0.00	1.929	6.79	2.66	2.5	97.5	0.0	-0.27	0.66	0.86	3.89	2.5	0.006	0.64	0.0	0.04	19.91	0.00	2.037	2.41	1.66	1.7	98.3	0.0	0.38	0.22	0.66	0.87	3.86	14766	1854	13	24	18	0	0	logfile
✔	9B1o	44086	2025-05-09	2024-03-13	3.1	3.49	3.19	3.4	0.004	0.77	0.0	0.04	11.21	0.01	2.424	0.63	0.00	1.6	98.4	0.0	-0.17	0.57	0.83	3.90	3.4	0.003	0.56	0.0	0.04	13.55	0.00	2.626	4.26	1.20	1.6	98.4	0.0	2.62	0.53	0.55	0.81	3.24	3945	515	2	0	2	0	0	logfile
✔	9B1L	44083	2025-05-09	2024-03-13	3.1	3.41	3.20	3.4	0.006	0.79	0.0	0.04	11.09	0.00	2.349	0.49	0.00	1.3	98.7	0.0	0.53	0.51	0.79	3.77	3.4	0.003	0.53	0.0	0.04	13.89	0.00	2.614	3.79	1.86	0.9	99.1	0.0	2.19	0.80	0.53	0.80	2.77	4041	529	2	0	1	0	0	logfile
✔	9B1M	44084	2025-05-09	2024-03-13	3.0	3.43	3.12	3.4	0.004	0.77	0.0	0.04	11.40	0.01	2.431	0.62	0.00	1.2	98.8	0.0	-0.01	0.49	0.77	4.39	3.4	0.003	0.63	0.0	0.04	14.17	0.00	2.492	4.49	2.15	1.6	98.4	0.0	2.39	0.63	0.53	0.81	3.07	3961	515	2	0	2	0	0	logfile
✔	9B1F	44077	2025-05-09	2024-03-13	2.9	3.23	2.97	3.2	0.004	0.61	0.0	0.04	11.29	0.00	2.308	1.38	0.00	1.2	98.8	0.0	0.97	0.59	0.81	3.59	3.2	0.002	0.56	0.0	0.04	14.10	0.00	2.544	4.76	1.44	1.2	98.8	0.0	2.42	0.79	0.55	0.80	3.04	3936	515	2	0	1	0	0	logfile
✔	9B1J	44081	2025-05-09	2024-03-13	3.0	3.35	3.07	3.3	0.006	0.84	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.004	0.61	0.0	0.04	14.14	0.00	2.518	4.00	1.92	2.3	97.7	0.0	2.18	0.77	0.54	0.79	2.68	3953	515	2	0	3	0	0	logfile
✔	9B1N	44085	2025-05-09	2024-03-13	3.1	3.52	3.26	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.004	0.65	0.0	0.04	12.94	0.00	2.527	3.00	0.24	1.4	98.6	0.0	2.11	0.47	0.65	0.85	2.92	3954	515	2	0	2	0	0	logfile
✔	9ENS	19843	2025-05-12	2024-03-13	3.0	2.21	3.01	2.1	0.004	0.61	0.0	0.05	15.31	0.00	2.199	6.98	0.00	3.5	96.5	0.0	-0.18	0.75	0.76	3.04	2.0	0.004	0.65	0.0	0.05	16.92	0.00	2.474	5.70	3.09	3.8	96.2	0.0	-0.13	0.35	0.77	0.79	2.70	9076	1161	2	0	5	0	0	logfile
✔	9B1D	44074	2025-05-30	2024-03-13	3.3	2.36	—	2.0	0.003	0.50	0.0	0.04	15.99	0.00	1.862	6.98	0.00	2.4	97.6	0.0	1.08	0.78	0.79	1.82	2.0	0.004	0.75	1.0	0.04	18.55	0.00	1.898	10.40	2.23	2.5	97.5	0.0	0.97	0.48	0.78	0.79	1.64	33147	4052	21	50	18	0	0	logfile

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