Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AZM	44016	2025-05-24	2024-03-11	2.68	3.32	2.73	3.0	0.004	0.85	0.0	0.04	22.71	0.01	1.968	17.67	4.61	9.7	90.0	0.3	-2.55	0.67	0.87	1.98	3.0	0.003	0.77	1.0	0.04	22.29	0.01	2.338	11.07	4.49	10.1	89.7	0.2	-1.48	0.53	0.67	0.88	1.74	25782	1952	16	483	0	0	0	logfile
✔	8YNi	39424	2025-05-15	2024-03-11	3.66	4.28	3.82	4.0	0.002	0.42	0.0	0.03	13.96	0.00	2.202	5.65	0.00	2.0	98.0	0.0	1.62	0.81	0.83	0.77	4.0	0.003	0.64	0.0	0.04	16.69	0.00	2.346	6.84	1.55	2.6	97.3	0.1	1.23	1.19	0.81	0.83	1.05	13529	1657	11	0	0	0	0	logfile
✔	8YNK	39425	2025-05-17	2024-03-11	3.62	4.24	3.85	4.0	0.002	0.40	0.0	0.03	13.75	0.00	2.242	4.95	0.00	3.0	97.0	0.0	1.98	0.81	0.82	0.72	4.0	0.002	0.61	0.0	0.04	16.08	0.00	2.496	6.98	1.82	3.0	97.0	0.0	1.81	0.84	0.82	0.83	0.66	11564	1409	8	0	0	0	0	logfile
✔	9AZ6	44013	2025-05-21	2024-03-10	2.98	3.75	2.88	3.3	0.004	0.68	0.0	0.04	15.39	0.00	1.887	10.08	0.75	0.9	99.1	0.0	1.17	0.74	0.82	2.74	3.3	0.004	0.75	0.0	0.04	16.21	0.00	1.930	9.35	1.41	1.4	98.6	0.0	1.60	0.92	0.75	0.88	2.45	21831	2803	18	0	10	0	0	logfile
✔	8YN3	39413	2025-05-11	2024-03-10	2.56	2.65	2.55	2.7	0.003	0.46	0.0	0.05	9.76	0.00	2.248	3.92	0.79	1.4	98.6	0.0	1.26	0.72	0.86	4.65	2.7	0.002	0.50	0.0	0.04	14.19	0.00	2.459	4.22	1.81	2.1	97.9	0.0	1.79	0.40	0.71	0.86	3.53	8201	1042	6	0	2	0	0	logfile
✔	8YMU	39408	2025-05-17	2024-03-10	2.89	3.09	2.89	3.2	0.003	0.72	0.0	0.05	13.50	0.00	2.074	14.46	0.20	6.6	92.9	0.6	-1.91	0.61	0.75	3.86	3.2	0.003	0.67	0.0	0.05	16.13	0.00	2.207	12.28	2.14	5.8	93.9	0.3	-0.50	0.55	0.60	0.77	3.72	15975	1086	3	0	0	0	7173	logfile
✔	8YMR	39405	2025-05-17	2024-03-10	3.09	3.28	3.09	3.3	0.003	0.57	0.0	0.04	13.58	0.00	2.063	14.46	0.10	5.8	93.6	0.6	-1.67	0.61	0.78	3.63	3.3	0.004	0.62	0.0	0.04	15.51	0.00	2.395	9.64	1.63	6.5	93.0	0.6	-1.06	1.02	0.58	0.79	3.32	16041	1086	3	0	0	0	7239	logfile
✔	8YMW	39409	2025-05-18	2024-03-10	3.2	3.41	3.21	3.4	0.003	0.54	0.0	0.05	16.42	0.00	2.147	7.03	0.31	4.5	95.5	0.0	-0.27	0.58	0.77	3.27	3.4	0.003	0.52	0.0	0.05	16.67	0.00	2.441	4.80	1.25	4.3	95.7	0.0	-0.12	0.32	0.59	0.77	3.26	17079	1068	3	0	0	0	8466	logfile
✔	8YMX	39410	2025-05-14	2024-03-10	3.27	2.16	3.30	1.8	0.003	0.67	3.0	0.09	17.98	0.00	1.936	49.90	0.33	15.5	84.2	0.3	-3.38	0.62	0.57	1.26	1.4	0.004	0.66	3.0	0.09	18.49	0.00	2.405	53.42	5.88	15.5	84.2	0.3	-3.43	0.37	0.63	0.58	1.55	12138	1014	3	0	0	0	3957	logfile
✔	8YN9	39419	2025-05-12	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.6	0.002	0.51	0.0	0.04	13.41	0.00	2.524	5.26	1.57	2.2	97.8	0.0	1.68	0.38	0.71	0.85	4.29	9048	1130	6	0	8	2	0	logfile
✔	8YMT	39407	2025-05-17	2024-03-10	2.93	3.12	2.95	3.2	0.004	0.94	0.0	0.10	13.44	0.01	1.967	19.73	0.00	6.4	92.4	1.2	-2.25	0.59	0.72	3.19	3.2	0.003	0.84	3.0	0.10	15.88	0.00	2.411	13.19	1.22	6.3	92.6	1.1	-1.14	1.05	0.61	0.75	3.15	15975	1086	3	0	0	0	7173	logfile
✔	8YMS	39406	2025-05-17	2024-03-10	3.14	3.32	3.16	3.3	0.003	0.81	0.0	0.06	13.52	0.00	2.086	18.93	0.00	8.7	90.6	0.6	-2.03	0.49	0.65	2.94	3.3	0.003	0.69	0.0	0.05	15.77	0.00	2.309	11.59	1.12	7.9	91.7	0.5	-1.21	1.44	0.56	0.72	2.99	15975	1086	3	0	0	0	7173	logfile
✔	8YN4	39414	2025-05-11	2024-03-10	2.97	3.15	2.95	3.1	0.002	0.40	0.0	0.04	8.47	0.00	2.276	4.44	0.33	1.1	98.9	0.0	1.49	0.67	0.81	3.52	3.1	0.005	0.66	0.0	0.05	14.60	0.00	2.464	7.18	3.51	2.3	97.7	0.0	1.50	1.24	0.68	0.82	3.21	8661	1127	6	0	2	0	0	logfile
✔	9AZ4	44012	2025-05-23	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.0	0.004	0.65	0.0	0.04	14.51	0.00	1.932	7.86	0.43	3.2	96.8	0.0	1.24	0.38	0.89	0.84	1.53	23865	3015	14	0	12	0	0	logfile
✔	8YN5	39415	2025-05-12	2024-03-10	2.7	2.85	2.68	2.8	0.002	0.53	0.0	0.06	9.60	0.00	2.209	4.33	0.42	1.6	98.4	0.0	1.27	0.71	0.85	4.97	2.8	0.003	0.56	0.0	0.04	13.44	0.00	2.534	5.38	1.67	1.9	98.1	0.0	1.75	1.17	0.72	0.86	3.63	9047	1141	6	0	6	0	0	logfile
✔	8YN1	39411	2025-05-19	2024-03-10	3.09	2.91	3.04	2.9	0.008	0.91	0.0	0.05	15.15	0.01	2.145	8.06	0.00	5.3	94.5	0.1	-1.49	0.76	0.79	3.15	3.0	0.002	0.55	0.0	0.04	16.55	0.00	2.019	4.36	1.40	3.2	96.8	0.0	0.57	0.94	0.79	0.83	2.29	12186	1495	5	0	2	0	0	logfile
✔	8YN2	39412	2025-05-12	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.002	0.53	0.0	0.04	13.92	0.00	2.529	4.54	1.91	2.2	97.8	0.0	2.16	0.49	0.71	0.84	3.40	8979	1131	6	0	6	0	0	logfile
✔	8YMP	39402	2025-05-13	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	3.1	0.003	0.85	0.0	0.04	18.76	0.01	2.438	12.55	3.23	6.1	93.9	0.0	0.26	1.91	0.52	0.72	2.83	9570	1184	4	0	2	0	0	logfile
✔	8YMQ	39403	2025-05-13	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.004	0.70	0.0	0.04	18.52	0.01	2.455	7.16	4.32	6.1	93.9	0.0	0.75	1.21	0.61	0.87	2.83	10524	1302	4	0	4	0	0	logfile
✔	9EMN	19821	2025-05-16	2024-03-08	3.3	3.55	3.25	3.5	0.003	0.59	0.0	0.04	17.62	0.01	2.236	5.30	0.38	6.0	94.0	0.0	-2.43	0.76	0.84	2.72	3.5	0.005	0.70	0.0	0.05	17.99	0.01	2.461	4.41	3.30	7.3	92.7	0.0	-2.07	0.96	0.75	0.83	2.87	14680	1829	4	0	0	0	0	logfile

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