Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AYV	43999	2025-05-18	2024-03-08	4.4	4.51	4.28	4.4	0.006	1.01	0.0	0.06	14.68	0.01	1.938	4.16	0.06	3.2	96.8	0.0	0.07	0.62	0.77	—	4.4	0.008	0.97	0.0	0.05	12.90	0.00	2.368	13.41	0.00	6.0	94.0	0.0	-0.41	1.24	0.63	0.81	—	17061	1751	36	0	494	0	0	logfile
✔	9AYS	43998	2025-05-19	2024-03-08	4.6	4.71	4.56	4.6	0.007	1.09	0.0	0.06	13.52	0.01	2.199	5.60	0.00	3.2	96.8	0.0	-0.77	0.67	0.74	—	4.6	0.003	0.82	0.0	0.05	12.34	0.00	2.401	11.55	0.00	4.2	95.8	0.0	-0.81	1.31	0.69	0.78	—	18710	1791	40	0	736	0	0	logfile
✔	9EMN	19821	2025-05-16	2024-03-08	3.3	3.55	3.25	3.5	0.003	0.59	0.0	0.04	17.62	0.01	2.236	5.30	0.38	6.0	94.0	0.0	-2.43	0.76	0.84	2.72	3.5	0.005	0.70	0.0	0.05	17.99	0.01	2.461	4.41	3.30	7.3	92.7	0.0	-2.07	0.96	0.75	0.83	2.87	14680	1829	4	0	0	0	0	logfile
✔	9AYW	44000	2025-05-24	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.80	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.003	0.58	0.0	0.04	15.74	0.00	2.404	3.89	1.95	3.0	97.0	0.0	0.47	1.57	0.68	0.83	3.02	24813	3123	6	0	30	0	0	logfile
✔	9AYY	44002	2025-05-24	2024-03-08	3.1	3.36	3.19	3.4	0.005	0.75	0.0	0.05	14.35	0.01	2.284	3.67	0.00	4.1	95.9	0.0	-1.28	0.65	0.78	2.46	3.4	0.002	0.53	0.0	0.04	15.07	0.00	2.480	4.42	0.99	3.2	96.8	0.0	0.06	0.34	0.66	0.80	2.26	24813	3123	6	0	30	0	0	logfile
✔	9EME	19818	2025-05-09	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.11	0.0	0.12	14.21	0.01	2.562	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.004	0.62	0.0	0.04	15.93	0.00	2.550	3.12	0.90	4.0	96.0	0.0	-2.93	1.18	0.48	0.82	5.29	4140	552	6	0	0	0	0	logfile
✔	9AY6	43981	2025-05-18	2024-03-07	4.0	4.17	3.94	4.1	0.006	0.90	0.0	0.05	13.03	0.01	2.225	2.21	0.00	2.8	97.2	0.0	0.10	0.71	0.80	—	4.1	0.004	0.78	0.0	0.05	13.74	0.00	2.358	7.49	2.39	4.1	95.9	0.0	0.00	1.34	0.74	0.83	—	16641	1787	45	0	322	0	0	logfile
✔	8YM0	39393	2025-05-10	2024-03-07	3.05	3.25	3.08	3.2	0.003	0.51	0.0	0.04	16.27	0.00	2.217	5.69	0.00	7.2	92.8	0.0	-0.56	0.66	0.83	2.79	3.2	0.007	0.68	0.0	0.04	17.37	0.00	2.599	4.08	1.38	7.8	92.2	0.0	0.31	0.30	0.60	0.83	2.61	4680	582	2	0	5	0	0	logfile
✔	9EM9	19814	2025-05-11	2024-03-07	3.76	4.06	3.82	4.0	0.004	0.75	0.0	0.04	14.92	0.01	1.853	3.14	0.00	5.1	94.9	0.0	-0.71	0.80	0.71	2.12	3.9	0.003	0.78	0.0	0.05	15.59	0.00	1.923	8.99	1.47	2.3	97.7	0.0	0.65	1.47	0.84	0.76	1.81	8182	1024	4	0	4	0	0	logfile
✔	9AYC	43985	2025-05-23	2024-03-07	3.23	3.84	3.34	3.7	0.004	0.61	0.0	0.04	11.28	0.00	2.353	0.34	0.00	1.3	98.7	0.0	1.11	0.65	0.84	2.92	3.7	0.003	0.50	0.0	0.04	13.87	0.00	2.437	3.79	1.01	2.1	97.9	0.0	2.96	0.82	0.66	0.85	2.21	23723	1481	1	0	0	0	11947	logfile
✔	8YLX	39392	2025-05-10	2024-03-07	3.18	3.40	3.21	3.4	0.005	0.68	0.0	0.04	15.30	0.00	2.213	6.16	0.59	7.6	92.2	0.2	-1.81	0.68	0.85	2.85	3.4	0.002	0.56	0.0	0.04	16.78	0.00	2.524	3.56	1.38	7.4	92.4	0.2	0.69	0.41	0.66	0.85	1.68	4660	582	2	0	3	0	0	logfile
✔	9EMA	19815	2025-05-17	2024-03-07	2.4	2.98	2.39	2.8	0.008	1.07	0.0	0.06	18.26	0.01	1.999	1.44	0.42	1.3	98.6	0.1	-0.24	0.80	0.76	1.87	2.7	0.003	0.51	0.0	0.04	18.16	0.00	1.906	3.92	0.66	2.1	97.9	0.0	1.76	1.41	0.86	0.92	3.94	15562	1974	12	0	13	0	0	logfile
✔	9AYF	43990	2025-05-20	2024-03-07	3.6	2.18	—	2.0	0.004	0.68	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	2.0	0.003	0.54	0.0	0.04	15.23	0.00	2.326	4.22	2.71	2.7	97.3	0.0	0.56	0.97	0.80	0.78	2.86	19630	2441	14	0	27	0	0	logfile
✔	9AYB	43984	2025-05-09	2024-03-07	3.19	3.65	3.19	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.002	0.51	0.0	0.04	14.11	0.00	2.617	3.42	1.70	1.4	98.6	0.0	1.88	0.32	0.43	0.78	2.01	3347	428	1	0	0	0	0	logfile
✔	8YLN	39385	2025-05-26	2024-03-06	3.53	3.60	3.53	3.5	0.006	0.81	0.0	0.05	16.78	0.01	2.185	6.77	1.10	4.8	95.2	0.0	-0.30	0.67	0.68	1.19	3.5	0.004	0.58	0.0	0.04	17.10	0.00	2.345	9.07	2.98	5.4	94.6	0.0	-0.14	0.57	0.69	0.70	1.21	27784	1694	4	0	0	0	13732	logfile
✔	9AXC	43932	2025-05-12	2024-03-06	4.16	3.88	3.99	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.68	0.0	0.05	13.86	0.00	2.444	9.49	0.00	3.5	96.4	0.1	0.39	0.63	0.73	0.78	—	8677	1079	6	0	2	0	0	logfile
✔	9AXA	43931	2025-05-15	2024-03-06	4.36	3.98	4.17	3.8	0.004	0.98	0.0	0.05	14.52	0.01	2.237	6.73	0.44	4.3	95.6	0.1	-0.95	0.83	0.78	—	3.8	0.003	0.70	0.0	0.04	14.60	0.00	2.403	10.59	0.00	4.4	95.5	0.1	0.28	1.87	0.84	0.79	—	12421	1553	8	0	2	0	0	logfile
✔	9AXF	43966	2025-05-21	2024-03-06	3.5	2.15	—	2.9	0.005	0.78	0.0	0.06	13.15	0.00	2.162	5.78	0.00	2.4	97.6	0.0	0.13	0.80	0.80	4.05	2.9	0.004	0.59	0.0	0.04	14.24	0.00	2.244	4.08	2.67	3.0	97.0	0.0	0.51	0.33	0.81	0.80	3.64	21342	2607	15	0	40	0	0	logfile
✔	9AXD	43935	2025-05-18	2024-03-06	3.8	3.99	3.82	3.9	0.007	0.91	0.0	0.05	11.95	0.01	1.793	4.51	0.00	2.6	97.4	0.0	0.23	0.73	0.80	2.73	3.9	0.006	0.80	0.0	0.05	13.35	0.00	2.367	7.26	2.34	4.9	95.1	0.0	-0.06	0.71	0.76	0.83	2.17	16580	1774	41	0	325	0	0	logfile
✔	9AXi	43967	2025-05-18	2024-03-06	3.3	3.46	3.27	3.4	0.007	1.08	0.0	0.06	11.48	0.01	2.219	2.04	0.00	1.1	98.9	0.0	0.64	0.66	0.86	4.18	3.4	0.004	0.67	0.0	0.04	12.99	0.00	2.479	3.92	1.38	2.2	97.8	0.0	0.34	1.03	0.67	0.88	3.25	17031	1704	37	0	544	0	0	logfile

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