Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AXA	43931	2025-05-15	2024-03-06	4.36	3.98	4.17	3.8	0.004	0.98	0.0	0.05	14.52	0.01	2.237	6.73	0.44	4.3	95.6	0.1	-0.95	0.83	0.78	—	3.8	0.003	0.70	0.0	0.04	14.60	0.00	2.403	10.59	0.00	4.4	95.5	0.1	0.28	1.87	0.84	0.79	—	12421	1553	8	0	2	0	0	logfile
✔	9AXC	43932	2025-05-12	2024-03-06	4.16	3.88	3.99	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.68	0.0	0.05	13.86	0.00	2.444	9.49	0.00	3.5	96.4	0.1	0.39	0.63	0.73	0.78	—	8677	1079	6	0	2	0	0	logfile
✔	9AXF	43966	2025-05-21	2024-03-06	3.5	2.15	—	2.9	0.005	0.78	0.0	0.06	13.15	0.00	2.162	5.78	0.00	2.4	97.6	0.0	0.13	0.80	0.80	4.05	2.9	0.004	0.59	0.0	0.04	14.24	0.00	2.244	4.08	2.67	3.0	97.0	0.0	0.51	0.33	0.81	0.80	3.64	21342	2607	15	0	40	0	0	logfile
✔	9AXL	43969	2025-05-14	2024-03-06	3.3	3.54	3.22	3.6	0.013	1.02	1.0	0.05	16.02	0.01	1.949	8.57	0.55	7.3	92.4	0.3	-1.38	0.70	0.80	2.77	3.6	0.003	0.59	0.0	0.04	16.14	0.01	2.003	5.59	2.06	6.1	93.7	0.2	-0.62	0.89	0.68	0.85	2.41	11748	1555	6	0	7	7	0	logfile
✔	8YKW	39374	2025-05-12	2024-03-05	2.75	3.17	2.86	3.1	0.005	0.66	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.004	0.61	0.0	0.04	15.73	0.00	2.457	4.81	2.37	2.4	97.6	0.0	1.63	0.91	0.62	0.86	3.06	8718	1124	6	0	1	0	0	logfile
✔	8S86	19798	2025-05-10	2024-03-05	2.8	3.06	2.70	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.004	0.72	0.0	0.05	15.81	0.00	2.461	14.74	2.09	4.0	96.0	0.0	-0.13	1.20	0.61	0.65	2.32	6177	785	2	0	0	0	0	logfile
✔	8YKV	39373	2025-05-12	2024-03-05	2.48	2.87	2.63	2.8	0.004	0.63	0.0	0.04	15.42	0.00	1.997	2.62	0.54	1.8	98.2	0.0	1.66	0.63	0.86	4.58	2.8	0.003	0.57	0.0	0.04	16.37	0.00	2.586	5.53	2.15	2.1	97.9	0.0	1.56	0.90	0.61	0.86	4.24	8665	1110	6	0	1	0	0	logfile
✔	8YKX	39375	2025-05-11	2024-03-05	2.69	3.09	2.85	3.0	0.007	0.67	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.57	0.0	0.04	15.48	0.00	2.590	5.09	1.50	1.9	98.1	0.0	1.58	0.44	0.60	0.84	4.03	8710	1121	6	0	1	0	0	logfile
✔	8YKH	39372	2025-05-10	2024-03-05	3.27	3.88	3.26	3.7	0.005	0.65	0.0	0.05	12.01	0.00	2.273	5.83	0.00	4.6	95.4	0.0	-0.85	0.70	0.84	3.36	3.7	0.003	0.68	0.0	0.04	13.64	0.00	2.501	4.91	0.55	3.1	96.6	0.2	-0.79	0.42	0.70	0.87	2.96	3330	425	3	0	2	0	0	logfile
✔	8YKG	39370	2025-05-29	2024-03-05	3.28	3.61	3.18	2.9	0.004	0.61	0.0	0.05	12.37	0.00	2.183	6.95	0.00	3.8	96.2	0.0	-0.56	0.79	0.74	2.24	3.0	0.003	0.60	0.0	0.04	14.03	0.00	2.528	4.87	1.23	3.4	96.6	0.0	0.04	1.77	0.83	0.86	2.08	26426	3353	10	0	23	0	0	logfile
✔	9AX5	43927	2025-05-12	2024-03-05	3.3	3.57	3.35	3.6	0.003	0.45	0.0	0.04	10.24	0.00	1.823	6.17	1.05	3.6	96.4	0.0	-0.16	0.72	0.83	3.44	3.6	0.003	0.60	0.0	0.04	14.33	0.00	2.031	6.76	2.62	3.3	96.7	0.0	0.63	1.69	0.71	0.85	2.74	8543	1065	4	0	3	0	0	logfile
✔	9AVL	43908	2025-05-19	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.005	0.61	0.0	0.05	14.96	0.00	2.329	5.21	2.73	3.5	96.5	0.0	0.24	0.40	0.78	0.76	2.84	18143	2247	13	0	24	0	0	logfile
✔	8YJY	39353	2025-05-09	2024-03-03	3.3	3.57	3.38	3.5	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.68	0.0	0.04	17.92	0.01	2.493	9.02	2.42	4.8	95.2	0.0	1.55	0.86	0.66	0.74	1.42	4254	530	2	0	0	0	0	logfile
✔	8YJW	39352	2025-05-13	2024-03-03	3.55	2.85	3.50	3.5	0.006	1.05	0.0	0.06	20.20	0.01	2.288	5.58	0.00	4.4	95.6	0.0	-3.20	0.72	0.77	2.33	3.5	0.004	0.66	0.0	0.04	21.01	0.00	2.372	12.60	2.58	4.3	95.7	0.0	-0.93	0.51	0.73	0.79	2.24	9946	1116	8	63	0	0	0	logfile
✔	9AVJ	43903	2025-05-22	2024-03-03	3.72	4.52	3.81	4.3	0.010	1.08	1.0	0.05	16.00	0.01	1.914	8.99	0.37	3.5	96.5	0.0	-0.50	0.76	0.64	0.64	4.3	0.003	0.78	0.0	0.05	17.14	0.00	1.813	11.98	4.08	4.5	95.5	0.0	-0.42	1.37	0.84	0.75	0.83	23188	2988	12	0	10	0	0	logfile
✔	9AVi	43902	2025-05-11	2024-03-03	3.02	3.96	3.03	3.7	0.013	1.94	0.0	0.08	14.20	0.01	2.430	9.05	6.29	7.9	92.1	0.0	-5.11	0.80	0.89	2.43	3.7	0.003	0.63	0.0	0.03	15.02	0.00	2.573	4.79	2.17	0.9	99.1	0.0	4.54	0.68	0.76	0.85	1.45	8370	1080	5	0	0	0	0	logfile
✔	8YJV	39351	2025-05-13	2024-03-03	3.51	2.76	3.49	3.5	0.007	1.08	0.0	0.06	20.74	0.01	2.317	5.90	0.10	5.0	95.0	0.0	-3.60	0.71	0.75	2.39	3.5	0.003	0.63	0.0	0.04	21.45	0.00	2.540	11.90	1.97	2.8	97.2	0.0	-1.56	0.46	0.72	0.76	2.11	9938	1111	8	65	0	0	0	logfile
✔	8YJS	39348	2025-05-13	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.5	0.004	0.65	0.0	0.04	20.62	0.00	2.495	12.47	1.97	4.0	96.0	0.0	-1.25	0.49	0.79	0.81	2.45	9880	1111	8	62	0	0	0	logfile
✔	8YJU	39350	2025-05-13	2024-03-02	3.78	3.49	3.67	3.5	0.005	1.03	0.0	0.06	19.79	0.01	2.324	5.53	0.00	5.1	94.9	0.0	-3.41	0.79	0.77	1.99	3.5	0.004	0.70	0.0	0.04	20.76	0.00	2.423	13.18	1.66	4.0	96.0	0.0	-1.01	0.50	0.81	0.78	2.18	9939	1111	8	65	0	0	0	logfile
✔	8YJP	39345	2025-05-10	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.63	0.0	0.04	17.66	0.00	2.454	9.84	1.84	3.2	96.8	0.0	2.58	1.01	0.75	0.75	1.97	4946	596	4	0	13	0	0	logfile

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