Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YJP	39345	2025-05-10	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.63	0.0	0.04	17.66	0.00	2.454	9.84	1.84	3.2	96.8	0.0	2.58	1.01	0.75	0.75	1.97	4946	596	4	0	13	0	0	logfile
✔	8YJL	39344	2025-05-13	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.62	0.00	2.374	13.42	2.79	3.5	96.5	0.0	-1.19	0.94	0.77	0.81	2.64	9853	1115	8	59	0	0	0	logfile
✔	9AVG	43901	2025-05-18	2024-03-02	3.6	2.11	—	1.8	0.005	0.70	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	1.8	0.005	0.63	0.0	0.04	14.80	0.00	2.348	7.83	1.78	3.7	96.3	0.0	-0.28	0.90	0.76	0.75	2.36	17498	2210	13	0	25	0	0	logfile
✔	8YJR	39347	2025-05-13	2024-03-02	3.51	3.58	3.60	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.6	0.005	0.91	0.0	0.04	21.20	0.00	2.308	11.87	1.14	3.2	96.8	0.0	-0.78	0.50	0.83	0.81	2.29	9962	1113	8	65	0	0	0	logfile
✔	8S7G	19771	2025-05-27	2024-03-01	3.43	4.12	3.60	3.4	0.007	0.67	0.0	0.05	15.83	0.00	1.689	45.11	1.95	5.2	94.6	0.1	-0.36	0.77	0.88	1.88	3.4	0.004	0.80	0.0	0.05	16.41	0.00	1.919	14.75	3.57	3.4	96.6	0.0	-0.23	1.45	0.78	0.89	1.53	30036	3856	25	36	22	0	0	logfile
✔	8YJH	39342	2025-05-13	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.003	0.64	0.0	0.04	19.75	0.00	2.493	11.71	1.86	3.4	96.6	0.0	-1.10	0.47	0.81	0.81	1.76	9735	1115	8	53	0	0	0	logfile
✔	8S7H	19772	2025-05-17	2024-03-01	2.8	2.85	1.65	4.2	0.004	1.03	0.0	0.05	14.77	0.01	2.167	18.22	0.84	2.3	97.7	0.0	0.46	0.50	0.45	0.25	4.2	0.004	0.92	0.0	0.05	17.83	0.01	2.439	10.95	1.80	3.3	96.7	0.0	-0.05	1.46	0.49	0.45	0.83	16120	2200	10	0	0	0	0	logfile
✔	8Yii	39320	2025-05-16	2024-02-29	3.42	2.67	3.46	3.5	0.003	0.64	0.0	0.04	18.82	0.00	1.943	10.29	0.50	4.4	95.5	0.1	-0.01	0.82	0.80	1.59	3.5	0.003	0.61	0.0	0.04	19.11	0.00	1.904	8.58	1.93	4.4	95.6	0.0	0.06	0.40	0.82	0.80	1.67	14855	1557	4	104	6	0	0	logfile
✔	8S7E	19768	2025-05-11	2024-02-29	3.4	3.72	3.43	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.60	0.0	0.05	18.95	0.00	2.378	13.21	2.96	5.6	94.4	0.0	-1.24	0.47	0.58	0.56	-0.12	7312	466	2	0	0	0	3648	logfile
✔	9AUH	43880	2025-05-20	2024-02-29	3.6	3.80	3.55	3.8	0.006	1.02	0.0	0.06	17.70	0.01	2.273	3.91	0.00	7.6	92.4	0.0	-2.13	0.73	0.80	1.69	3.8	0.005	0.91	1.0	0.05	15.58	0.00	2.185	7.37	2.77	8.0	92.0	0.0	-1.43	0.40	0.74	0.81	1.62	20312	2481	27	0	85	0	0	logfile
✔	9AUi	43881	2025-05-20	2024-02-29	3.8	4.05	3.82	4.0	0.006	1.10	0.0	0.06	18.39	0.01	2.242	4.31	0.00	8.7	91.3	0.0	-2.58	0.74	0.82	1.75	4.0	0.003	0.74	0.0	0.05	15.84	0.00	2.380	7.44	2.32	7.7	92.3	0.0	-1.36	0.38	0.75	0.83	1.43	20184	2457	30	0	87	0	0	logfile
✔	9AUF	43878	2025-05-10	2024-02-29	2.73	2.96	2.73	3.0	0.005	0.73	0.0	0.05	21.70	0.01	2.331	3.00	0.57	2.9	97.1	0.0	-0.18	0.72	0.88	5.39	3.0	0.006	0.64	0.0	0.05	22.02	0.01	2.244	4.98	3.69	3.4	96.6	0.0	0.96	0.87	0.72	0.88	5.00	7251	389	5	192	0	0	0	logfile
✔	9AUG	43879	2025-05-20	2024-02-29	3.8	4.06	3.84	4.1	0.006	1.04	0.0	0.06	18.45	0.01	2.270	3.78	0.00	8.3	91.7	0.0	-2.65	0.74	0.80	1.64	4.0	0.003	0.70	0.0	0.04	15.88	0.00	2.426	6.95	2.45	7.2	92.8	0.0	-1.52	0.40	0.75	0.82	1.45	20211	2457	30	0	87	0	0	logfile
✔	8S7D	19766	2025-05-10	2024-02-29	3.2	3.46	3.22	3.5	0.003	0.57	0.0	0.04	19.45	0.00	2.090	13.28	4.70	3.5	96.5	0.0	-0.33	0.55	0.71	1.65	3.5	0.004	0.62	0.0	0.04	19.18	0.00	2.468	13.00	4.86	4.8	95.2	0.0	-0.46	0.33	0.59	0.72	1.99	5488	691	4	0	0	0	0	logfile
✔	8Yi7	39311	2025-05-10	2024-02-29	3.57	3.79	3.53	3.8	0.013	1.64	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.63	0.0	0.04	15.04	0.00	2.480	6.25	2.38	2.6	97.4	0.0	0.33	1.48	0.71	0.84	1.97	5586	697	6	0	4	0	0	logfile
✔	8YiH	39319	2025-05-16	2024-02-29	4.08	4.55	4.24	4.2	0.003	0.64	0.0	0.04	18.40	0.00	1.910	18.43	0.07	4.6	95.2	0.2	-0.09	0.88	0.81	—	4.2	0.006	0.77	0.0	0.04	17.13	0.00	1.900	19.69	0.00	6.7	93.2	0.1	-0.44	0.51	0.88	0.82	—	14692	1560	4	96	3	0	0	logfile
✔	8YiG	39318	2025-05-26	2024-02-29	3.15	3.37	3.32	3.4	0.003	0.61	0.0	0.04	17.43	0.00	2.101	10.30	0.25	3.0	97.0	0.0	0.72	0.63	0.74	2.07	3.4	0.003	0.55	0.0	0.04	18.08	0.00	2.397	8.56	2.13	2.6	97.4	0.0	0.62	0.59	0.71	0.82	2.23	28154	3138	6	126	0	0	0	logfile
✔	9AUC	43877	2025-05-13	2024-02-28	2.4	2.09	2.33	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.002	0.57	0.0	0.04	16.30	0.00	2.484	4.47	1.10	1.9	98.1	0.0	1.15	0.91	0.64	0.82	3.46	10369	1275	11	0	10	16	0	logfile
✔	9AU7	43872	2025-05-18	2024-02-28	3.4	2.42	—	3.3	0.004	0.66	0.0	0.04	14.95	0.01	2.224	13.06	0.21	4.4	95.6	0.0	0.16	0.61	0.54	0.16	2.0	0.005	0.65	0.0	0.04	16.19	0.01	2.230	13.47	1.55	5.3	94.6	0.1	0.44	1.34	0.67	0.64	1.73	17304	1079	4	0	0	0	8703	logfile
✔	8YHU	39301	2025-05-10	2024-02-28	2.88	2.30	2.91	2.1	0.004	0.74	0.0	0.05	15.50	0.00	2.248	11.29	0.30	13.0	86.8	0.1	-3.42	0.69	0.66	2.73	2.1	0.003	0.67	0.0	0.05	15.59	0.00	2.524	7.69	2.70	11.2	88.8	0.0	-3.13	0.34	0.71	0.69	2.04	5990	719	8	0	15	0	0	logfile

• ← previous
• Page 83 of 642
• next →