Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AU7	43872	2025-05-18	2024-02-28	3.4	2.42	—	3.3	0.004	0.66	0.0	0.04	14.95	0.01	2.224	13.06	0.21	4.4	95.6	0.0	0.16	0.61	0.54	0.16	2.0	0.005	0.65	0.0	0.04	16.19	0.01	2.230	13.47	1.55	5.3	94.6	0.1	0.44	1.34	0.67	0.64	1.73	17304	1079	4	0	0	0	8703	logfile
✔	9AU2	43842	2025-05-23	2024-02-28	3.1	3.34	3.11	3.3	0.005	0.64	2.0	0.05	9.79	0.01	2.030	3.71	1.16	3.0	96.9	0.1	-0.91	0.63	0.73	5.07	3.3	0.003	0.53	0.0	0.04	12.02	0.00	2.430	2.48	2.05	2.2	97.8	0.0	0.56	0.36	0.78	0.85	3.90	23745	3419	20	0	49	0	0	logfile
✔	8YHE	39288	2025-05-21	2024-02-28	3.07	3.30	3.14	3.3	0.009	1.19	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.006	0.62	0.0	0.04	18.58	0.00	2.150	8.80	3.16	3.1	96.8	0.0	0.28	0.45	0.69	0.82	2.28	21183	2561	22	76	9	0	0	logfile
✔	8YHo	39290	2025-05-10	2024-02-28	2.8	3.60	2.94	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.83	0.0	0.04	15.18	0.00	2.490	11.58	2.12	7.1	92.9	0.0	-0.35	1.34	0.75	0.79	2.10	6206	759	3	0	0	0	0	logfile
✔	8YH6	39282	2025-05-12	2024-02-27	3.62	4.12	—	3.7	0.013	1.51	0.0	0.09	14.43	0.03	2.215	12.85	0.94	4.9	95.0	0.1	-2.37	0.57	0.50	0.66	3.8	0.004	0.85	0.0	0.05	16.44	0.00	2.467	17.46	3.15	4.7	95.3	0.0	-0.24	1.51	0.64	0.65	0.44	8706	1104	6	0	1	0	0	logfile
✔	9ATL	43830	2025-05-27	2024-02-27	3.26	3.65	3.34	3.5	0.005	0.63	0.0	0.04	16.17	0.00	2.177	5.99	0.66	5.8	94.1	0.0	1.42	0.42	0.89	1.27	3.5	0.002	0.51	0.0	0.03	16.47	0.00	2.420	4.94	0.97	4.6	95.4	0.0	2.17	1.16	0.41	0.86	1.21	30712	4290	11	0	0	0	0	logfile
✔	9ATZ	43838	2025-05-21	2024-02-27	3.4	3.47	3.20	3.4	0.008	1.06	0.0	0.05	11.74	0.01	1.872	4.38	0.13	3.4	96.6	0.0	-0.67	0.72	0.83	3.42	3.4	0.004	0.71	0.0	0.04	13.39	0.00	2.448	5.60	1.87	3.2	96.7	0.1	-0.61	0.63	0.74	0.86	2.64	21190	1676	38	0	1440	0	0	logfile
✔	8YH0	39278	2025-05-12	2024-02-27	2.86	3.63	—	3.3	0.004	0.66	0.0	0.06	13.13	0.00	2.070	8.58	0.00	3.7	96.2	0.1	-0.02	0.68	0.71	1.98	3.3	0.004	0.90	0.0	0.05	15.95	0.01	2.484	12.44	2.41	4.5	95.5	0.0	-0.10	1.59	0.71	0.79	1.59	8693	1103	6	0	1	0	0	logfile
✔	8YGV	39271	2025-05-23	2024-02-27	3.3	4.13	3.41	3.9	0.005	0.66	0.0	0.05	15.83	0.00	1.283	10.37	0.35	4.1	95.9	0.0	0.27	0.86	0.87	1.52	3.8	0.005	0.66	0.0	0.05	16.61	0.00	2.501	7.75	3.01	3.9	96.1	0.0	0.52	0.34	0.86	0.87	1.39	24034	3127	7	0	0	0	0	logfile
✔	9ATo	43831	2025-05-27	2024-02-27	3.2	3.77	3.23	3.6	0.004	0.68	0.0	0.05	15.57	0.00	2.186	8.33	0.36	2.9	97.1	0.1	0.48	0.83	0.84	2.22	3.6	0.003	0.58	0.0	0.04	15.51	0.00	2.502	5.64	2.14	2.8	97.1	0.1	0.69	0.38	0.84	0.89	2.24	27725	3478	24	0	40	0	0	logfile
✔	8YH3	39280	2025-05-12	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.81	0.0	0.04	16.09	0.00	2.410	12.79	2.41	4.3	95.7	0.0	0.32	1.85	0.67	0.73	0.54	8691	1103	6	0	1	0	0	logfile
✔	8YGU	39264	2025-05-09	2024-02-27	3.13	2.22	3.06	2.0	0.006	0.92	0.0	0.06	8.81	0.01	2.179	1.51	0.00	5.9	94.1	0.0	-3.27	0.58	0.78	4.48	2.1	0.003	0.62	0.0	0.04	13.36	0.00	2.407	3.30	3.18	6.1	93.9	0.0	-0.98	1.25	0.60	0.81	3.71	3693	474	5	0	0	0	0	logfile
✔	8YH9	39285	2025-05-21	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.004	0.67	0.0	0.04	20.62	0.00	2.455	12.36	6.06	8.7	91.3	0.0	-2.44	0.93	0.67	0.73	1.07	21153	2450	10	60	0	0	0	logfile
✔	8YH2	39279	2025-05-12	2024-02-27	3.27	4.08	—	3.8	0.004	0.64	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.79	0.0	0.04	16.01	0.00	2.518	16.08	2.62	4.1	95.8	0.1	-0.07	1.56	0.66	0.71	0.77	8690	1103	6	0	1	0	0	logfile
✔	9ATW	43835	2025-05-21	2024-02-27	3.5	3.26	3.55	4.2	0.012	2.18	0.0	0.13	15.03	0.01	2.675	7.20	0.00	5.3	94.7	0.0	-3.62	0.74	0.74	3.46	4.2	0.004	0.69	0.0	0.06	15.24	0.00	2.397	25.78	8.00	3.6	96.4	0.0	-3.47	1.35	0.73	0.78	1.83	21952	1344	64	0	0	0	11840	logfile
✔	8YH5	39281	2025-05-12	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.85	0.0	0.05	16.46	0.00	2.379	14.05	3.04	5.2	94.7	0.1	-0.29	1.17	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	9ATP	43832	2025-05-16	2024-02-27	3.5	4.08	3.59	3.8	0.005	0.73	0.0	0.05	15.18	0.01	2.043	15.12	0.21	6.2	93.5	0.3	-1.38	0.75	0.76	2.34	3.8	0.004	0.64	0.0	0.05	15.55	0.00	2.366	9.92	2.71	5.8	94.0	0.2	-0.93	0.57	0.75	0.79	2.09	13004	1636	6	0	0	0	0	logfile
✔	8YHA	39286	2025-05-26	2024-02-27	3.4	3.38	3.35	3.3	0.003	0.62	0.0	0.04	20.62	0.00	1.865	6.67	0.54	6.1	93.9	0.0	-0.99	0.82	0.84	2.19	3.3	0.006	0.66	0.0	0.04	20.57	0.00	2.387	7.36	3.53	8.0	92.0	0.0	-0.50	0.28	0.83	0.86	2.46	28503	3333	14	108	2	0	0	logfile
✔	8YGC	39243	2025-05-22	2024-02-26	4.03	4.66	4.27	4.3	0.007	0.80	0.0	0.05	17.33	0.00	1.806	19.52	0.63	7.2	91.9	0.9	-1.06	0.86	0.76	—	4.3	0.003	0.69	0.0	0.04	13.72	0.00	2.409	12.12	0.00	5.5	94.1	0.4	0.03	1.31	0.88	0.83	—	23242	2817	6	0	0	0	0	logfile
✔	8YGS	39261	2025-05-12	2024-02-26	3.47	2.24	3.47	2.2	0.011	1.50	5.0	0.11	11.76	0.01	2.320	2.13	0.00	5.9	94.0	0.1	-3.41	0.46	0.66	3.05	2.1	0.005	0.73	0.0	0.04	14.97	0.00	2.509	5.42	4.47	4.4	95.6	0.0	-1.68	1.24	0.56	0.79	3.41	9291	1187	7	0	0	0	0	logfile

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