Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ASQ	43823	2025-05-14	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.005	0.61	0.0	0.04	18.17	0.00	2.346	4.50	1.16	3.5	96.5	0.0	1.75	0.30	0.84	0.88	2.38	12359	1257	7	100	4	2	0	logfile
✔	9ASN	43820	2025-05-14	2024-02-26	3.2	4.03	3.21	3.2	0.005	0.61	0.0	0.04	17.26	0.00	2.197	6.23	0.00	3.6	96.4	0.0	1.14	0.77	0.69	2.28	3.2	0.003	0.51	0.0	0.03	17.43	0.00	2.274	4.35	0.66	3.1	96.9	0.0	1.61	1.15	0.83	0.86	2.03	11697	1184	6	97	4	2	0	logfile
✔	8YGR	39260	2025-05-10	2024-02-26	3.84	2.36	3.79	2.3	0.014	1.78	3.0	0.11	12.37	0.01	2.279	1.64	0.00	3.5	96.5	0.0	-2.89	0.52	0.63	2.84	2.2	0.004	0.70	0.0	0.04	15.09	0.00	2.472	7.51	4.94	6.4	93.6	0.0	-1.80	0.76	0.64	0.75	3.36	5900	745	3	0	0	0	0	logfile
✔	8YGo	39258	2025-05-16	2024-02-26	3.29	2.47	3.29	2.2	0.004	0.71	0.0	0.04	18.57	0.00	2.118	12.63	0.45	6.9	92.5	0.6	-0.29	0.71	0.68	1.10	2.2	0.003	0.67	0.0	0.04	19.02	0.00	2.420	9.61	3.33	7.1	92.6	0.3	0.19	0.97	0.73	0.71	1.24	14208	1711	4	0	0	0	0	logfile
✔	9ASo	43821	2025-05-13	2024-02-26	2.9	3.56	2.93	3.1	0.003	0.60	0.0	0.05	17.62	0.00	2.281	3.38	1.04	1.6	98.4	0.0	1.28	0.80	0.66	2.99	3.1	0.006	0.63	0.0	0.04	17.51	0.00	2.432	3.71	0.81	2.7	97.3	0.0	1.28	0.90	0.89	0.90	2.80	9426	966	6	71	4	2	0	logfile
✔	9ASJ	43816	2025-05-14	2024-02-26	3.5	3.98	3.58	3.9	0.005	0.71	0.0	0.04	18.82	0.00	2.184	13.04	0.24	4.6	95.4	0.0	-1.01	0.73	0.72	1.19	3.9	0.003	0.67	0.0	0.04	18.96	0.00	2.518	11.46	3.19	5.7	94.2	0.1	-0.22	1.41	0.69	0.71	1.37	11626	1482	4	0	2	0	0	logfile
✔	9ASP	43822	2025-05-14	2024-02-26	3.2	4.18	3.27	3.2	0.004	0.62	0.0	0.04	19.27	0.00	2.196	10.51	0.09	5.1	94.9	0.0	0.10	0.77	0.67	1.49	3.2	0.003	0.54	0.0	0.04	19.37	0.00	2.497	6.71	1.79	4.3	95.7	0.0	0.49	1.20	0.83	0.84	1.53	12227	1256	6	96	4	1	0	logfile
✔	8S5W	19752	2025-05-09	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	8YG6	39237	2025-05-14	2024-02-26	2.77	3.81	2.97	3.3	0.005	0.69	0.0	0.05	16.65	0.02	2.151	6.90	0.24	6.9	93.1	0.0	-0.49	0.91	0.86	2.65	3.3	0.003	0.64	0.0	0.04	14.02	0.00	2.590	4.86	0.95	7.0	93.0	0.0	-0.57	1.07	0.92	0.88	3.02	11442	1395	9	0	18	0	0	logfile
✔	8YGA	39240	2025-05-30	2024-02-26	4.53	7.03	4.63	4.5	0.004	0.86	0.0	0.05	16.94	0.01	2.059	18.82	0.63	6.9	92.7	0.3	-0.73	0.89	0.73	—	4.5	0.002	0.63	0.0	0.04	14.50	0.00	2.396	11.06	0.00	4.8	95.0	0.2	-0.09	7.60	0.89	0.69	—	33140	3980	4	0	0	0	0	logfile
✔	9ASL	43818	2025-05-22	2024-02-26	3.5	3.93	3.52	3.9	0.003	0.66	0.0	0.04	18.71	0.01	2.155	16.35	0.48	5.1	94.9	0.0	-1.52	0.76	0.75	1.34	3.9	0.004	0.80	0.0	0.04	18.56	0.00	2.187	12.30	4.31	4.3	95.6	0.1	-0.31	0.74	0.75	0.77	0.99	23128	2964	4	0	0	0	0	logfile
✔	8YGH	39250	2025-05-14	2024-02-26	2.77	3.71	2.80	3.3	0.003	0.64	0.0	0.04	16.16	0.00	2.230	9.85	1.74	4.3	95.7	0.0	0.53	0.90	0.88	2.42	3.3	0.003	0.61	0.0	0.04	16.45	0.00	2.403	6.91	1.21	4.5	95.5	0.0	0.43	0.30	0.90	0.88	2.26	12244	1510	2	0	0	0	0	logfile
✔	9ASK	43817	2025-05-14	2024-02-26	3.6	4.04	3.67	3.9	0.003	0.60	0.0	0.04	18.52	0.00	2.275	14.03	0.40	4.4	95.6	0.0	-1.03	0.71	0.70	0.95	3.9	0.003	0.66	0.0	0.04	19.04	0.00	2.488	12.27	4.95	4.6	95.2	0.1	-0.79	1.06	0.70	0.70	0.97	11564	1482	2	0	0	0	0	logfile
✔	8YGE	39245	2025-05-15	2024-02-26	2.76	3.69	2.80	3.2	0.006	0.59	0.0	0.04	17.86	0.00	1.476	6.74	1.62	4.7	95.2	0.1	0.62	0.90	0.89	2.27	3.2	0.003	0.60	0.0	0.04	18.16	0.00	2.036	6.10	1.69	3.6	96.3	0.1	1.00	0.86	0.90	0.89	2.17	13479	1558	8	40	5	0	0	logfile
✔	8YG8	39238	2025-05-14	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.60	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.2	0.006	0.78	0.0	0.05	14.49	0.00	2.351	7.63	0.87	9.2	90.8	0.0	-0.99	1.05	0.94	0.89	2.47	11414	1395	8	0	16	0	0	logfile
✔	8S61	19754	2025-05-09	2024-02-26	3.53	3.76	3.48	3.7	0.008	0.63	0.0	0.04	16.57	0.00	1.994	5.65	0.00	6.7	93.3	0.0	-1.96	0.61	0.83	2.65	3.7	0.002	0.57	0.0	0.04	17.11	0.00	2.597	4.77	3.80	5.2	94.8	0.0	-0.05	4.16	0.69	0.84	2.06	3990	502	3	0	1	0	0	logfile
✔	8S5U	19750	2025-05-09	2024-02-26	3.28	3.39	3.21	3.3	0.009	0.71	0.0	0.04	15.77	0.01	2.338	5.38	0.47	3.6	96.4	0.0	-0.65	0.65	0.83	3.31	3.3	0.005	0.61	0.0	0.04	16.50	0.00	2.594	4.25	1.89	2.6	97.4	0.0	1.53	0.95	0.70	0.87	2.96	3998	502	3	0	2	0	0	logfile
✔	8YGG	39249	2025-05-14	2024-02-26	2.98	3.85	3.05	3.4	0.003	0.65	1.0	0.04	15.45	0.00	2.233	9.55	2.07	2.7	97.2	0.1	0.81	0.90	0.88	2.30	3.4	0.003	0.61	0.0	0.04	15.93	0.00	2.480	7.61	2.00	3.0	97.0	0.0	0.93	0.34	0.90	0.89	2.18	12096	1490	2	0	0	0	0	logfile
✔	8YGC	39243	2025-05-22	2024-02-26	4.03	4.66	4.27	4.3	0.007	0.80	0.0	0.05	17.33	0.00	1.806	19.52	0.63	7.2	91.9	0.9	-1.06	0.86	0.76	—	4.3	0.003	0.69	0.0	0.04	13.72	0.00	2.409	12.12	0.00	5.5	94.1	0.4	0.03	1.31	0.88	0.83	—	23242	2817	6	0	0	0	0	logfile
✔	8YGS	39261	2025-05-12	2024-02-26	3.47	2.24	3.47	2.2	0.011	1.50	5.0	0.11	11.76	0.01	2.320	2.13	0.00	5.9	94.0	0.1	-3.41	0.46	0.66	3.05	2.1	0.005	0.73	0.0	0.04	14.97	0.00	2.509	5.42	4.47	4.4	95.6	0.0	-1.68	1.24	0.56	0.79	3.41	9291	1187	7	0	0	0	0	logfile

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